RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 NCF1P14598 390 aaPredicted RBP12.84□□□□□ -0.35
SLIRP-201ENST00000238688 ACPPP15309 386 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 GNSP15586 552 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 LBPP18428 481 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 KRT6CP48668 564 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 CTSCP53634 463 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 CDH13P55290 713 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 KIAA1024LP59773 190 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 FOXC1Q12948 553 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 STX5Q13190 355 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 ARHGAP19Q14CB8 494 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 WSCD2Q2TBF2 565 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 COQ5Q5HYK3 327 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 VWA5B1Q5TIE3 1220 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 NXNQ6DKJ4 435 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 DET1Q7L5Y6 550 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 AMZ2Q86W34 360 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 HEATR4Q86WZ0 1026 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 TP53I13Q8NBR0 393 aaPredicted RBP12.84□□□□□ -0.35
SLIRP-201ENST00000238688 AGR3Q8TD06 166 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 GANCQ8TET4 914 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 SKA2Q8WVK7 121 aaPredicted RBP12.84□□□□□ -0.35
SLIRP-201ENST00000238688 ATP6V1E2Q96A05 226 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 MCUR1Q96AQ8 359 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 BIRC7Q96CA5 298 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 CAMK1GQ96NX5 476 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 SLC17A9Q9BYT1 436 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 MIR1-1HGQ9H1L0 117 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 IPPKQ9H8X2 491 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 SEMA4BQ9NPR2 832 aaPredicted RBP12.84□□□□□ -0.35
SLIRP-201ENST00000238688 UTP6Q9NYH9 597 aaKnown RBP12.84□□□□□ -0.35
SLIRP-201ENST00000238688 ATXN10Q9UBB4 475 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 ADAMTS6Q9UKP5 1117 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 COQ6Q9Y2Z9 468 aa12.84□□□□□ -0.35
SLIRP-201ENST00000238688 SLC28A1O00337 649 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 INPP4BO15327 924 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 TAPBPO15533 448 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 SH3BP5O60239 455 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 KDM1AO60341 852 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 RNGTTO60942 597 aaKnown RBP12.83□□□□□ -0.36
SLIRP-201ENST00000238688 RASSF9O75901 435 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 WFS1O76024 890 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 SEMA4FO95754 770 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 IGHV4-34P06331 123 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 HMOX2P30519 316 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 CCR10P46092 362 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 AGTR2P50052 363 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 ATXN3P54252 364 aaPredicted RBP12.83□□□□□ -0.36
SLIRP-201ENST00000238688 TRAF3Q13114 568 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 LIPJQ5W064 366 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 DBX2Q6ZNG2 339 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 MILR1Q7Z6M3 343 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 SYVN1Q86TM6 617 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 PDZD3Q86UT5 571 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 TREML1Q86YW5 311 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 C10orf67Q8IYJ2 551 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 L3MBTL4Q8NA19 623 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 OR2T34Q8NGX1 318 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 OR14C36Q8NHC7 312 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 DLG3Q92796 817 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 SCARF2Q96GP6 870 aaPredicted RBP12.83□□□□□ -0.36
SLIRP-201ENST00000238688 PPP3R2Q96LZ3 170 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 NSUN5Q96P11 429 aaKnown RBP12.83□□□□□ -0.36
SLIRP-201ENST00000238688 TMEM79Q9BSE2 394 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 SLC25A23Q9BV35 468 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 TBC1D10AQ9BXI6 508 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 BTBD1Q9H0C5 482 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 WDR55Q9H6Y2 383 aaPredicted RBP12.83□□□□□ -0.36
SLIRP-201ENST00000238688 NOL11Q9H8H0 719 aaKnown RBP12.83□□□□□ -0.36
SLIRP-201ENST00000238688 EBF2Q9HAK2 575 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 MRPL40Q9NQ50 206 aaKnown RBP12.83□□□□□ -0.36
SLIRP-201ENST00000238688 DNAJC11Q9NVH1 559 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 TAS2R1Q9NYW7 299 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 ARMCX1Q9P291 453 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 SNX6Q9UNH7 406 aa12.83□□□□□ -0.36
SLIRP-201ENST00000238688 A0A1B0GVT2 93 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 A0A1W2PQU0 124 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 B2RBV5 119 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 CACNB4O00305 520 aaPredicted RBP12.82□□□□□ -0.36
SLIRP-201ENST00000238688 IFRD1O00458 451 aaPredicted RBP12.82□□□□□ -0.36
SLIRP-201ENST00000238688 TNFRSF10CO14798 259 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 CCNT2O60583 730 aaKnown RBP12.82□□□□□ -0.36
SLIRP-201ENST00000238688 CBFA2T3O75081 653 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 MTX2O75431 263 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 SKAP2O75563 359 aaPredicted RBP12.82□□□□□ -0.36
SLIRP-201ENST00000238688 POP7O75817 140 aaKnown RBP12.82□□□□□ -0.36
SLIRP-201ENST00000238688 CLDN9O95484 217 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 GUCA1CO95843 209 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 KRT16P08779 473 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 COX4I1P13073 169 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 HSD3B1P14060 373 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 ZNF8P17098 575 aaPredicted RBP12.82□□□□□ -0.36
SLIRP-201ENST00000238688 HSD3B2P26439 372 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 PIK3R1P27986 724 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 HNF4AP41235 474 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 CASP2P42575 452 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 HSPA7P48741 367 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 CSNK1EP49674 416 aaKnown RBP12.82□□□□□ -0.36
SLIRP-201ENST00000238688 YPEL5P62699 121 aa12.82□□□□□ -0.36
SLIRP-201ENST00000238688 ERVK-8P63133 956 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms