RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PPP3CCP48454 512 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 NEK2P51955 445 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 ARHGDIAP52565 204 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 CDK5R2Q13319 367 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 AQP6Q13520 282 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 GPNMBQ14956 572 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 RGS21Q2M5E4 152 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 CDKL4Q5MAI5 379 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 TTC23LQ6PF05 361 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 DOK6Q6PKX4 331 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 SLC16A12Q6ZSM3 486 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 UBE2R2Q712K3 238 aaPredicted RBP18.24■□□□□ 0.51
CPSF3-201ENST00000238112 LRRC70Q7Z2Q7 622 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 GALNT5Q7Z7M9 940 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 TSPAN33Q86UF1 283 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 CHPT1Q8WUD6 406 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 ITFG2Q969R8 447 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 TESCQ96BS2 214 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 CLSTN3Q9BQT9 956 aa18.24■□□□□ 0.51
CPSF3-201ENST00000238112 TRIT1Q9H3H1 467 aaKnown RBP18.24■□□□□ 0.51
CPSF3-201ENST00000238112 PABPN1LA6NDY0 278 aaKnown RBP18.23■□□□□ 0.51
CPSF3-201ENST00000238112 ZNF99A8MXY4 864 aaPredicted RBP18.23■□□□□ 0.51
CPSF3-201ENST00000238112 UGT2B11O75310 529 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 LRATO95237 230 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 FTH1P02794 183 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 IMPDH2P12268 514 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 CDKN2CP42773 168 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 MLLT10P55197 1068 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 GP2P55259 537 aaKnown RBP18.23■□□□□ 0.51
CPSF3-201ENST00000238112 IL1RL1Q01638 556 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 OCA2Q04671 838 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 RAPSNQ13702 412 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 CPZQ66K79 652 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 ANKRD13BQ86YJ7 626 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 PIK3C3Q8NEB9 887 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 ABHD11Q8NFV4 315 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 ZNF566Q969W8 418 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 PPT2Q9UMR5 302 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 B3GNT3Q9Y2A9 372 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 EVPLLA8MZ36 301 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 XPNPEP2O43895 674 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 MITFO75030 526 aaPredicted RBP18.23■□□□□ 0.51
CPSF3-201ENST00000238112 IGSF6O95976 241 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 B3GALT4O96024 378 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 SDC1P18827 310 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 TACR1P25103 407 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 SERPINA4P29622 427 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 MAGEA2P43356 314 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 GSTM4Q03013 218 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 ITGADQ13349 1161 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 GTF2H3Q13889 308 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 GGTA1PQ4G0N0 100 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 RBM12BQ8IXT5 1001 aaKnown RBP18.23■□□□□ 0.51
CPSF3-201ENST00000238112 TCAIMQ8N3R3 496 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 GPR26Q8NDV2 337 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 ASIC4Q96FT7 647 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 CMTM7Q96FZ5 175 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 SLC22A12Q96S37 553 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 COPS8Q99627 209 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 TSEN34Q9BSV6 310 aaKnown RBP18.23■□□□□ 0.51
CPSF3-201ENST00000238112 RIBC2Q9H4K1 309 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 VNN3Q9NY84 501 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 ZDHHC3Q9NYG2 299 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 GPRC5BQ9NZH0 403 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 ERGIC3Q9Y282 383 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 TMED5Q9Y3A6 229 aa18.23■□□□□ 0.51
CPSF3-201ENST00000238112 BOLA2-SMG1P6H3BVE0 249 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 HIST1H2AGP0C0S8 130 aaPredicted RBP18.22■□□□□ 0.51
CPSF3-201ENST00000238112 HIST1H2ADP20671 130 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 PTPN6P29350 595 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 SEMG2Q02383 582 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 LDLRAP1Q5SW96 308 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 CHPFQ8IZ52 775 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 TMCO5AQ8N6Q1 288 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 MCOLN3Q8TDD5 553 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 HIST1H2AHQ96KK5 128 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 HIST1H2AJQ99878 128 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 H2AFJQ9BTM1 129 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 ABCG8Q9H221 673 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 NPIPB15A6NHN6 443 aaPredicted RBP18.22■□□□□ 0.51
CPSF3-201ENST00000238112 MYO1GB0I1T2 1018 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 SULT1C4O75897 302 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 HOXB9P17482 250 aaPredicted RBP18.22■□□□□ 0.51
CPSF3-201ENST00000238112 CCR7P32248 378 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 CSNK1DP48730 415 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 CD97P48960 835 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 EMX1Q04741 257 aaPredicted RBP18.22■□□□□ 0.51
CPSF3-201ENST00000238112 SLC44A4Q53GD3 710 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 FBLIM1Q8WUP2 373 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 RORBQ92753 470 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 NELL1Q92832 810 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 APOLD1Q96LR9 279 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 ZNF347Q96SE7 839 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 NMRK2Q9NPI5 230 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 KLHL42Q9P2K6 505 aa18.22■□□□□ 0.51
CPSF3-201ENST00000238112 FUOMA2VDF0 154 aa18.21■□□□□ 0.51
CPSF3-201ENST00000238112 ABLIM3O94929 683 aa18.21■□□□□ 0.51
CPSF3-201ENST00000238112 CYP4B1P13584 511 aa18.21■□□□□ 0.51
CPSF3-201ENST00000238112 OPRL1P41146 370 aa18.21■□□□□ 0.51
CPSF3-201ENST00000238112 KIR3DL1P43629 444 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms