RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ERVPABLB-1P60509 514 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 OLR1P78380 273 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 SCN1BQ07699 218 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 GALNT1Q10472 559 aaPredicted RBP10.8□□□□□ -0.68
CLN3-244ENST00000636147 ACOX1Q15067 660 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 STEAP3Q658P3 488 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 BBS7Q8IWZ6 715 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 DEPDC4Q8N2C3 294 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 C7orf57Q8NEG2 295 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 TSPEARQ8WU66 669 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 PIH1D2Q8WWB5 315 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 TSGA13Q96PP4 275 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 OSBPL10Q9BXB5 764 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 NFKBIZQ9BYH8 718 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 TRIM45Q9H8W5 580 aaPredicted RBP10.8□□□□□ -0.68
CLN3-244ENST00000636147 CPNE5Q9HCH3 593 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 TAS2R9Q9NYW1 312 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 AP3M1Q9Y2T2 418 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 UGT2A1Q9Y4X1 527 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 A0A1B0GTL3 188 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 M0R129 80 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 SEMA3DO95025 777 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 FYNP06241 537 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 FGF4P08620 206 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 PBX3P40426 434 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 YBX1P67809 324 aaKnown RBP10.8□□□□□ -0.68
CLN3-244ENST00000636147 KIAA1614Q5VZ46 1190 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 LETMD1Q6P1Q0 360 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 GOLGA7Q7Z5G4 137 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 TLK2Q86UE8 772 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 CELF2-AS1Q8N7Q2 184 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 EFHD2Q96C19 240 aaPredicted RBP10.8□□□□□ -0.68
CLN3-244ENST00000636147 CSF3RQ99062 836 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 ABHD16BQ9H3Z7 469 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 TREX1Q9NSU2 369 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 RBPJLQ9UBG7 517 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 RAI2Q9Y5P3 530 aa10.8□□□□□ -0.68
CLN3-244ENST00000636147 LOC730098B7Z3J9 87 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 CLIC1O00299 241 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 TSPAN9O75954 239 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 SERPIND1P05546 499 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 PSMA1P25786 263 aaKnown RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 PSEN2P49810 448 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 MVKQ03426 396 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 CTU2Q2VPK5 515 aaKnown RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 PYCR3Q53H96 274 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 FBXL22Q6P050 247 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 MSANTD2Q6P1R3 559 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 PRR23CQ6ZRP0 262 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 ZZZ3Q8IYH5 903 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 TMCO6Q96DC7 493 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 UBXN10Q96LJ8 280 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 TCF25Q9BQ70 676 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 PAAF1Q9BRP4 392 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 AMBRA1Q9C0C7 1298 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 DERL2Q9GZP9 239 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 FBXO44Q9H4M3 255 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 COQ3Q9NZJ6 369 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 CCL15-CCL14A0A0B4J2E2 113 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 PCP4L1A6NKN8 68 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 USP2O75604 605 aaPredicted RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 PDE9AO76083 593 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 DDNO94850 711 aaPredicted RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 MMP3P08254 477 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 OGNP20774 298 aaKnown RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 IGFBP6P24592 240 aaPredicted RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 RAB14P61106 215 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 SNRPD2P62316 118 aaKnown RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 TUBA1BP68363 451 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.79□□□□□ -0.68
CLN3-244ENST00000636147 CDH18Q13634 790 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 GANABQ14697 944 aaKnown RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 CCL15Q16663 113 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 ERAP2Q6P179 960 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 Q6ZPB1 254 aaPredicted RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 TUBA1AQ71U36 451 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 MON1AQ86VX9 555 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 TMEM151AQ8N4L1 468 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 MUL1Q969V5 352 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 BARD1Q99728 777 aaKnown RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 DPH2Q9BQC3 489 aaPredicted RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 SLC30A2Q9BRI3 323 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 RHNO1Q9BSD3 238 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 OR51E2Q9H255 320 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 C11orf16Q9NQ32 467 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 SSR3Q9UNL2 185 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 MRPS7Q9Y2R9 242 aaKnown RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 ATAD5Q96QE3 1844 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 FABP12A6NFH5 140 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 SOBPA7XYQ1 873 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 AREL1O15033 823 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 HPRP00739 348 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 ENGP17813 658 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 TIE1P35590 1138 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 PTPN5P54829 565 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 ALDH6A1Q02252 535 aaKnown RBP10.79□□□□□ -0.68
CLN3-244ENST00000636147 ST3GAL4Q11206 333 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 SCAPQ12770 1279 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 SELENBP1Q13228 472 aa10.79□□□□□ -0.68
CLN3-244ENST00000636147 NFE2Q16621 373 aaPredicted RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms