RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 DET1Q7L5Y6 550 aa12.31□□□□□ -0.44
PNKP-217ENST00000625216 PRSS42Q7Z5A4 293 aa12.31□□□□□ -0.44
PNKP-217ENST00000625216 SPNS2Q8IVW8 549 aa12.31□□□□□ -0.44
PNKP-217ENST00000625216 CACNA2D3Q8IZS8 1091 aa12.31□□□□□ -0.44
PNKP-217ENST00000625216 IL22RA1Q8N6P7 574 aa12.31□□□□□ -0.44
PNKP-217ENST00000625216 TGM7Q96PF1 710 aa12.31□□□□□ -0.44
PNKP-217ENST00000625216 NDNQ99608 321 aa12.31□□□□□ -0.44
PNKP-217ENST00000625216 TRIT1Q9H3H1 467 aaKnown RBP12.31□□□□□ -0.44
PNKP-217ENST00000625216 ZNF768Q9H5H4 540 aaKnown RBP12.31□□□□□ -0.44
PNKP-217ENST00000625216 CAB39LQ9H9S4 337 aa12.31□□□□□ -0.44
PNKP-217ENST00000625216 SNX15Q9NRS6 342 aa12.31□□□□□ -0.44
PNKP-217ENST00000625216 PCMTD2Q9NV79 361 aa12.31□□□□□ -0.44
PNKP-217ENST00000625216 PILRAQ9UKJ1 303 aa12.31□□□□□ -0.44
PNKP-217ENST00000625216 PSMD13Q9UNM6 376 aa12.31□□□□□ -0.44
PNKP-217ENST00000625216 COLEC10Q9Y6Z7 277 aa12.31□□□□□ -0.44
PNKP-217ENST00000625216 FASNP49327 2511 aaKnown RBP12.3□□□□□ -0.44
PNKP-217ENST00000625216 IGLV3-16A0A075B6K0 115 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 TMEM120BA0PK00 339 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 QSOX1O00391 747 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 SGTAO43765 313 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 TYROBPO43914 113 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 RAD1O60671 282 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 SLC35G4P0C7Q5 338 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 MTHFD1P11586 935 aaKnown RBP12.3□□□□□ -0.44
PNKP-217ENST00000625216 NDUFS1P28331 727 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 PRLHRP49683 370 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 PGGT1BP53609 377 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 GFERP55789 205 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 MPP2Q14168 576 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 IL11RAQ14626 422 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 ZKSCAN8Q15776 578 aaPredicted RBP12.3□□□□□ -0.44
PNKP-217ENST00000625216 KIAA1614Q5VZ46 1190 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 ZNF549Q6P9A3 640 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 CFAP206Q8IYR0 622 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 GPATCH11Q8N954 259 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 BANPQ8N9N5 519 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 HM13Q8TCT9 377 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 KLHL6Q8WZ60 621 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 LPGAT1Q92604 370 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 PMEPA1Q969W9 287 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 APOPT1Q96IL0 206 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 ELMO2Q96JJ3 720 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 SMC6Q96SB8 1091 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 INSM2Q96T92 566 aaPredicted RBP12.3□□□□□ -0.44
PNKP-217ENST00000625216 CD180Q99467 661 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 EFHD1Q9BUP0 239 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 IMP3Q9NV31 184 aaKnown RBP12.3□□□□□ -0.44
PNKP-217ENST00000625216 INTS10Q9NVR2 710 aaKnown RBP12.3□□□□□ -0.44
PNKP-217ENST00000625216 MKS1Q9NXB0 559 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 SIDT1Q9NXL6 827 aaKnown RBP12.3□□□□□ -0.44
PNKP-217ENST00000625216 SEMA5BQ9P283 1151 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 SLC39A10Q9ULF5 831 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 TMEM184BQ9Y519 407 aaPredicted RBP12.3□□□□□ -0.44
PNKP-217ENST00000625216 PCDHGA4Q9Y5G9 962 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 HEBP2Q9Y5Z4 205 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 KALRNO60229 2985 aa12.3□□□□□ -0.44
PNKP-217ENST00000625216 PRPF4O43172 522 aaKnown RBP eCLIP12.29□□□□□ -0.44
PNKP-217ENST00000625216 RASSF9O75901 435 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 AP2A2O94973 939 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 ACRV1P26436 265 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 PBLDP30039 288 aaPredicted RBP12.29□□□□□ -0.44
PNKP-217ENST00000625216 TAS2R39P59534 338 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 ABHD18Q0P651 414 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 RPA4Q13156 261 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 MAP7Q14244 749 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 ZNF460Q14592 562 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 AARS2Q5JTZ9 985 aaKnown RBP12.29□□□□□ -0.44
PNKP-217ENST00000625216 CTSL3PQ5NE16 218 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 HECTD2Q5U5R9 776 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 CACHD1Q5VU97 1274 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 CAPRIN2Q6IMN6 1127 aaKnown RBP12.29□□□□□ -0.44
PNKP-217ENST00000625216 CDHR3Q6ZTQ4 885 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 TAS2R42Q7RTR8 314 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 SDCCAG8Q86SQ7 713 aaPredicted RBP12.29□□□□□ -0.44
PNKP-217ENST00000625216 VASH2Q86V25 355 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 SERPINA9Q86WD7 417 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 KMT5CQ86Y97 462 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 NLGN4XQ8N0W4 816 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 CARFQ8N187 725 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 ANKRD42Q8N9B4 389 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 NLGN4YQ8NFZ3 816 aaPredicted RBP12.29□□□□□ -0.44
PNKP-217ENST00000625216 RSC1A1Q92681 617 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.29□□□□□ -0.44
PNKP-217ENST00000625216 KIAA1143Q96AT1 154 aaPredicted RBP12.29□□□□□ -0.44
PNKP-217ENST00000625216 C12orf66Q96MD2 445 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 TCF12Q99081 682 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 TTC1Q99614 292 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 OLFM1Q99784 485 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 CTRCQ99895 268 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 WWP1Q9H0M0 922 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 C12orf65Q9H3J6 166 aaKnown RBP12.29□□□□□ -0.44
PNKP-217ENST00000625216 KIR3DX1Q9H7L2 352 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 SSU72Q9NP77 194 aaKnown RBP12.29□□□□□ -0.44
PNKP-217ENST00000625216 CORO1CQ9ULV4 474 aaPredicted RBP12.29□□□□□ -0.44
PNKP-217ENST00000625216 CRYL1Q9Y2S2 319 aa12.29□□□□□ -0.44
PNKP-217ENST00000625216 ZFC3H1O60293 1989 aaKnown RBP12.29□□□□□ -0.44
PNKP-217ENST00000625216 UBA6A0AVT1 1052 aaPredicted RBP12.28□□□□□ -0.44
PNKP-217ENST00000625216 IFRD1O00458 451 aaPredicted RBP12.28□□□□□ -0.44
PNKP-217ENST00000625216 PHGDHO43175 533 aaKnown RBP12.28□□□□□ -0.44
PNKP-217ENST00000625216 OR1I1O60431 355 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms