RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 KLHL20Q9Y2M5 609 aa14.7□□□□□ -0.06
LIG1-219ENST00000600055 CELSR3Q9NYQ7 3312 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 TEX51A0A1B0GUA7 166 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 FAM95CA0A1B0GW59 222 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 FAM159BA6NKW6 160 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 GFYI3L273 518 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 TIAF1O95411 115 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 CATP04040 527 aaKnown RBP14.69□□□□□ -0.06
LIG1-219ENST00000600055 GSTA2P09210 222 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 LIPCP11150 499 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 FGF5P12034 268 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 ECHS1P30084 290 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 SKIV2L2P42285 1042 aaKnown RBP14.69□□□□□ -0.06
LIG1-219ENST00000600055 PDAP1Q13442 181 aaKnown RBP14.69□□□□□ -0.06
LIG1-219ENST00000600055 ZNF460Q14592 562 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 CYS1Q717R9 158 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 TIPARPQ7Z3E1 657 aaKnown RBP14.69□□□□□ -0.06
LIG1-219ENST00000600055 DTX1Q86Y01 620 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 RASGRP3Q8IV61 690 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 OR9A1PQ8NGU1 263 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 MAGEC3Q8TD91 643 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 FBF1Q8TES7 1133 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 DLG3Q92796 817 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 LINGO1Q96FE5 620 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 TEFMQ96QE5 360 aaKnown RBP14.69□□□□□ -0.06
LIG1-219ENST00000600055 DPH1Q9BZG8 443 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 SPRY4Q9C004 299 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 FGF21Q9NSA1 209 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 NSMCE4AQ9NXX6 385 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 ADAMTS6Q9UKP5 1117 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 CORO1CQ9ULV4 474 aaPredicted RBP14.69□□□□□ -0.06
LIG1-219ENST00000600055 PCDHB11Q9Y5F2 797 aa14.69□□□□□ -0.06
LIG1-219ENST00000600055 URB1O60287 2271 aaKnown RBP14.68□□□□□ -0.06
LIG1-219ENST00000600055 A0A0J9YY10 115 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 STMND1H3BQB6 276 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 MYO1CO00159 1063 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 EIF3FO00303 357 aaPredicted RBP14.68□□□□□ -0.06
LIG1-219ENST00000600055 PRICKLE3O43900 615 aaPredicted RBP14.68□□□□□ -0.06
LIG1-219ENST00000600055 ZNF500O60304 480 aaPredicted RBP14.68□□□□□ -0.06
LIG1-219ENST00000600055 SPAG6O75602 509 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 FAM155BO75949 473 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 KRT37O76014 449 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 STK17BO94768 372 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 TSPAN12O95859 305 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 SYF2O95926 243 aaKnown RBP14.68□□□□□ -0.06
LIG1-219ENST00000600055 RHOXF2BP0C7M4 288 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 CD82P27701 267 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 PSMB5P28074 263 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 TAS2R39P59534 338 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 ACY1Q03154 408 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 IL11RAQ14626 422 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 EFTUD2Q15029 972 aaKnown RBP eCLIP14.68□□□□□ -0.06
LIG1-219ENST00000600055 CYP2A13Q16696 494 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 SLC5A12Q1EHB4 618 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 COL28A1Q2UY09 1125 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 KBTBD12Q3ZCT8 623 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 TMTC4Q5T4D3 741 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 TMEM207Q6UWW9 146 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 CDHR3Q6ZTQ4 885 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 UBE2R2Q712K3 238 aaPredicted RBP14.68□□□□□ -0.06
LIG1-219ENST00000600055 VASH2Q86V25 355 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 PPP1R3BQ86XI6 285 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 CTAGE3PQ8IX95 158 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 C19orf47Q8N9M1 422 aaKnown RBP14.68□□□□□ -0.06
LIG1-219ENST00000600055 CDKL2Q92772 493 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 VPS39Q96JC1 886 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 RHOXF2Q9BQY4 288 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 ZPBPQ9BS86 351 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 RAB11FIP5Q9BXF6 653 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 RHOJQ9H4E5 214 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 FAM60AQ9NP50 221 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 PDE7BQ9NP56 450 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 NINJ2Q9NZG7 142 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 SPATA7Q9P0W8 599 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 MTRF1LQ9UGC7 380 aaKnown RBP14.68□□□□□ -0.06
LIG1-219ENST00000600055 PILRAQ9UKJ1 303 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 RARRES3Q9UL19 164 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 MTO1Q9Y2Z2 717 aaKnown RBP14.68□□□□□ -0.06
LIG1-219ENST00000600055 ZZEF1O43149 2961 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 USP24Q9UPU5 2620 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 ADAMTS20P59510 1910 aa14.68□□□□□ -0.06
LIG1-219ENST00000600055 A0A1W2PPV9 198 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.67□□□□□ -0.06
LIG1-219ENST00000600055 HCRTR1O43613 425 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 RAD1O60671 282 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 KIAA0754O94854 1291 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 ERGP11308 486 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 RGS4P49798 205 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 IL2P60568 153 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 TUBB4BP68371 445 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 DEFB110Q30KQ9 67 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 PRAMEF17Q5VTA0 474 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 PWWP2BQ6NUJ5 590 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 SUSD1Q6UWL2 747 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 CEP97Q8IW35 865 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 MYO1HQ8N1T3 1032 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 RAB42Q8N4Z0 105 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 PPM1NQ8N819 430 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 FBXO15Q8NCQ5 510 aaPredicted RBP14.67□□□□□ -0.06
LIG1-219ENST00000600055 PPFIBP2Q8ND30 876 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms