RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 CBSLP0DN79 551 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 CD9P21926 228 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 GNLYP22749 145 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 CBSP35520 551 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 AIMP2Q13155 320 aaKnown RBP13.1□□□□□ -0.31
TRIM28-211ENST00000597968 TMED2Q15363 201 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 FAM214AQ32MH5 1076 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 DRICH1Q6PGQ1 229 aaPredicted RBP13.1□□□□□ -0.31
TRIM28-211ENST00000597968 OR2L8Q8NGY9 312 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 HMGCLL1Q8TB92 370 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 MAGEC3Q8TD91 643 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 RAD51AP1Q96B01 352 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 MENTQ9BUN1 341 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 SPRTNQ9H040 489 aaPredicted RBP13.1□□□□□ -0.31
TRIM28-211ENST00000597968 ATP13A2Q9NQ11 1180 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 EIF2B3Q9NR50 452 aaKnown RBP13.1□□□□□ -0.31
TRIM28-211ENST00000597968 CDYLQ9Y232 598 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 R3HDM2Q9Y2K5 976 aaKnown RBP13.1□□□□□ -0.31
TRIM28-211ENST00000597968 ZKSCAN5Q9Y2L8 839 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 TCAF1Q9Y4C2 921 aa13.1□□□□□ -0.31
TRIM28-211ENST00000597968 USP9YO00507 2555 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-211ENST00000597968 A0A1B0GX78 115 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 TCRBV7S2A1N4TA0A589 114 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 AGPSO00116 658 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 RASGRF2O14827 1237 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 PFDN6O15212 129 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 ITGAXP20702 1163 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 RPS3P23396 243 aaKnown RBP eCLIP13.09□□□□□ -0.319e-11■■■■□ 23.2
TRIM28-211ENST00000597968 MMP11P24347 488 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 AOAHP28039 575 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 OTX2P32243 289 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 CCR7P32248 378 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 CCNFP41002 786 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 HSPA14Q0VDF9 509 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 GRM7Q14831 915 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 BRD3Q15059 726 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 CYP2A13Q16696 494 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 CCDC38Q502W7 563 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 PCID2Q5JVF3 399 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 ZNF534Q76KX8 674 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 OVCH1Q7RTY7 1134 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 TAB3Q8N5C8 712 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-211ENST00000597968 ZNF655Q8N720 491 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-211ENST00000597968 CCDC89Q8N998 374 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 PPHLN1Q8NEY8 458 aaKnown RBP13.09□□□□□ -0.31
TRIM28-211ENST00000597968 OR6P1Q8NGX9 317 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 GSDMBQ8TAX9 411 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 ZNF285Q96NJ3 590 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 IL22Q9GZX6 179 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 KLHL25Q9H0H3 589 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 ZNF552Q9H707 407 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-211ENST00000597968 RAB6BQ9NRW1 208 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 IRAK4Q9NWZ3 460 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 P4HTMQ9NXG6 502 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 ZNF148Q9UQR1 794 aa13.09□□□□□ -0.31
TRIM28-211ENST00000597968 FITM1A5D6W6 292 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 OR51F1A6NGY5 319 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 A6NL46 340 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 TCP11X1B4DZS4 312 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 DSCR3O14972 297 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 KRT86O43790 486 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 OR1I1O60431 355 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 IFNB1P01574 187 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 MAGP20916 626 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 PEBP1P30086 187 aaKnown RBP13.08□□□□□ -0.32
TRIM28-211ENST00000597968 CDC25BP30305 580 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 UQCRFS1P47985 274 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 CDK16Q00536 496 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 CCNG2Q16589 344 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 DEFB110Q30KQ9 67 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 C4orf17Q53FE4 359 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 Q6ZS92 163 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 TRIM73Q86UV7 250 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 SLC13A5Q86YT5 568 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-211ENST00000597968 MCATQ8IVS2 390 aaKnown RBP13.08□□□□□ -0.32
TRIM28-211ENST00000597968 ZADH2Q8N4Q0 377 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 LINC01555Q8NAE3 123 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 MAIP1Q8WWC4 291 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 FOPNLQ96NB1 174 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 BARD1Q99728 777 aaKnown RBP13.08□□□□□ -0.32
TRIM28-211ENST00000597968 NRTNQ99748 197 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 CATSPERZQ9NTU4 200 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 PIH1D1Q9NWS0 290 aaKnown RBP13.08□□□□□ -0.32
TRIM28-211ENST00000597968 DHCR7Q9UBM7 475 aaKnown RBP13.08□□□□□ -0.32
TRIM28-211ENST00000597968 PLEKHB1Q9UF11 243 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-211ENST00000597968 GNPTGQ9UJJ9 305 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 SLC39A10Q9ULF5 831 aa13.08□□□□□ -0.32
TRIM28-211ENST00000597968 DRG1Q9Y295 367 aaKnown RBP13.08□□□□□ -0.32
TRIM28-211ENST00000597968 H3BMM5 538 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 PCDH17O14917 1159 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 PHF2O75151 1096 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 APRTP07741 180 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 UMODP07911 640 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 ATP5DP30049 168 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 NPY2RP49146 381 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 EMP3P54852 163 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 ADARP55265 1226 aaKnown RBP13.07□□□□□ -0.32
TRIM28-211ENST00000597968 GRB7Q14451 532 aa13.07□□□□□ -0.32
TRIM28-211ENST00000597968 SF1Q15637 639 aaKnown RBP13.07□□□□□ -0.32
TRIM28-211ENST00000597968 RNF187Q5TA31 235 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms