RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	C5AR2	Q9P296	337 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	SRPK3	Q9UPE1	567 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	PLCL2	Q9UPR0	1127 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	B3GNT3	Q9Y2A9	372 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	CAPN6	Q9Y6Q1	641 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	SEC16A	O15027	2179 aa		10.13	□□□□□ -0.79
LSM4-205	ENST00000597776	SNRNP200	O75643	2136 aa	Known RBP	10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	HEATR9	A2RTY3	570 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	KRT87P	A6NCN2	255 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	LIAS	O43766	372 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	SUN1	O94901	812 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	GAS8	O95995	478 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	IFNB1	P01574	187 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	ALPP	P05187	535 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	ETS1	P14921	441 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	ALAS2	P22557	587 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	MCM3	P25205	808 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	GRIA3	P42263	894 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	RAB28	P51157	221 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	PLOD1	Q02809	727 aa	Predicted RBP	10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	GRB7	Q14451	532 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	OASL	Q15646	514 aa	Known RBP	10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	CYP2A13	Q16696	494 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	DNAJC21	Q5F1R6	531 aa	Known RBP	10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	LYPLAL1	Q5VWZ2	237 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	TMEM139	Q8IV31	216 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	MCAT	Q8IVS2	390 aa	Known RBP	10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	SYCE1	Q8N0S2	351 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	IQCK	Q8N0W5	287 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	KRT222	Q8N1A0	295 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	OR4L1	Q8NH43	312 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	PTER	Q96BW5	349 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	BAG1	Q99933	345 aa	Predicted RBP	10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	ILKAP	Q9H0C8	392 aa	Predicted RBP	10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	RBSN	Q9H1K0	784 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	ZNF552	Q9H707	407 aa	Predicted RBP	10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	CUEDC1	Q9NWM3	386 aa	Predicted RBP	10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	MARCH4	Q9P2E8	410 aa	Predicted RBP	10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	FBXL4	Q9UKA2	621 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	NTNG1	Q9Y2I2	539 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	CSAG2	Q9Y5P2	127 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	ESPL1	Q14674	2120 aa		10.12	□□□□□ -0.79
LSM4-205	ENST00000597776	NOTCH2	Q04721	2471 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	CCDC88C	Q9P219	2028 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	ERI2	A8K979	691 aa	Known RBP	10.11	□□□□□ -0.79
LSM4-205	ENST00000597776		E7EVH7	732 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	KDM1A	O60341	852 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	GPC4	O75487	556 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	CBX6	O95503	412 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	CD9	P21926	228 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	VARS	P26640	1264 aa	Known RBP	10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	COL8A1	P27658	744 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	GCGR	P47871	477 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	PRAME	P78395	509 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	ACVR1	Q04771	509 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	KIF5A	Q12840	1032 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	SNX1	Q13596	522 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	FASTKD1	Q53R41	847 aa	Known RBP	10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	FCRL6	Q6DN72	434 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	SHISA6	Q6ZSJ9	500 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	TTLL10	Q6ZVT0	673 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	COX15	Q7KZN9	410 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	CUZD1	Q86UP6	607 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	DCUN1D3	Q8IWE4	304 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	DTWD1	Q8N5C7	304 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	METTL27	Q8N6F8	245 aa	Predicted RBP	10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	C1orf54	Q8WWF1	131 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	HES6	Q96HZ4	224 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	RANBP9	Q96S59	729 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	TTC1	Q99614	292 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	RAB6B	Q9NRW1	208 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	CTSF	Q9UBX1	484 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	ERRFI1	Q9UJM3	462 aa	Predicted RBP	10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	CDC23	Q9UJX2	597 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	RUVBL2	Q9Y230	463 aa	Known RBP	10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	TCAF1	Q9Y4C2	921 aa		10.11	□□□□□ -0.79
LSM4-205	ENST00000597776	HIVEP3	Q5T1R4	2406 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776		A0A1B0GX78	115 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776		F8W8V4	182 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	AGPS	O00116	658 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	NRP2	O60462	931 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	CLDN1	O95832	211 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	IGHE	P01854	428 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	APOA4	P06727	396 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	APRT	P07741	180 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	CD63	P08962	238 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	ZSCAN5DP	P0CG00	497 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	ADRA1D	P25100	572 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	ITGA3	P26006	1051 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	AOAH	P28039	575 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	PSMB5	P28074	263 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	FDFT1	P37268	417 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	BDKRB1	P46663	353 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	CRADD	P78560	199 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	SF1	Q15637	639 aa	Known RBP	10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	HIF1A	Q16665	826 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	CCSMST1	Q4G0I0	132 aa		10.1	□□□□□ -0.79
LSM4-205	ENST00000597776	CRB2	Q5IJ48	1285 aa		10.1	□□□□□ -0.79

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