RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 TMEM9Q9P0T7 183 aa14.93□□□□□ -0.02
UPF1-204ENST00000596842 VPS9D1Q9Y2B5 631 aa14.93□□□□□ -0.02
UPF1-204ENST00000596842 N6AMT1Q9Y5N5 214 aa14.93□□□□□ -0.02
UPF1-204ENST00000596842 PRSS21Q9Y6M0 314 aa14.93□□□□□ -0.02
UPF1-204ENST00000596842 ZNF99A8MXY4 864 aaPredicted RBP14.92□□□□□ -0.02
UPF1-204ENST00000596842 KPNA4O00629 521 aaPredicted RBP14.92□□□□□ -0.02
UPF1-204ENST00000596842 C7P10643 843 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 CA5AP35218 305 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 HPCAL1P37235 193 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 ARHGDIAP52565 204 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 CCSAPQ6IQ19 270 aaPredicted RBP14.92□□□□□ -0.02
UPF1-204ENST00000596842 PDPRQ8NCN5 879 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 PAPD5Q8NDF8 572 aaKnown RBP14.92□□□□□ -0.02
UPF1-204ENST00000596842 ZNF548Q8NEK5 533 aaPredicted RBP14.92□□□□□ -0.02
UPF1-204ENST00000596842 TRUB1Q8WWH5 349 aaKnown RBP14.92□□□□□ -0.02
UPF1-204ENST00000596842 SLC35B4Q969S0 331 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 DACH2Q96NX9 599 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 DPH2Q9BQC3 489 aaPredicted RBP14.92□□□□□ -0.02
UPF1-204ENST00000596842 ARL15Q9NXU5 204 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 POU2F3Q9UKI9 436 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 PABPN1LA6NDY0 278 aaKnown RBP14.92□□□□□ -0.02
UPF1-204ENST00000596842 ZNF623O75123 536 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 DUSP11O75319 330 aaKnown RBP14.92□□□□□ -0.02
UPF1-204ENST00000596842 SEMA3DO95025 777 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 CPNE6O95741 557 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 GSTM2P28161 218 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 MAPKAPK2P49137 400 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 SLC13A2Q13183 592 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 RBM48Q5RL73 367 aaKnown RBP14.92□□□□□ -0.02
UPF1-204ENST00000596842 SCML4Q8N228 414 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 MGME1Q9BQP7 344 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 NEURL2Q9BR09 285 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 ARHGAP39Q9C0H5 1083 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 ELOVL6Q9H5J4 265 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 PDP1Q9P0J1 537 aaPredicted RBP14.92□□□□□ -0.02
UPF1-204ENST00000596842 GNPTGQ9UJJ9 305 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 IGLV3-10A0A075B6K4 115 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 LOC100506127A0A0U1RQW1 187 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 PRSS23O95084 383 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 ABCB1P08183 1280 aaPredicted RBP14.92□□□□□ -0.02
UPF1-204ENST00000596842 COL6A1P12109 1028 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 TACR1P25103 407 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 DGKEP52429 567 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 DSG4Q86SJ6 1040 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 ADGRG2Q8IZP9 1017 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 KCNJ9Q92806 393 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 DOK1Q99704 481 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 C8orf4Q9NR00 106 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 OLA1Q9NTK5 396 aaKnown RBP14.92□□□□□ -0.02
UPF1-204ENST00000596842 NUDT4Q9NZJ9 180 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 DLGAP4Q9Y2H0 992 aa14.92□□□□□ -0.02
UPF1-204ENST00000596842 SERPINB7O75635 380 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 EPB42P16452 691 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 ZNF7P17097 686 aaPredicted RBP14.91□□□□□ -0.02
UPF1-204ENST00000596842 ITPKAP23677 461 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 GP2P55259 537 aaKnown RBP14.91□□□□□ -0.02
UPF1-204ENST00000596842 OR4F3Q6IEY1 312 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 COLGALT2Q8IYK4 626 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 MAGEH1Q9H213 219 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 TNKS2Q9H2K2 1166 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 VNN3Q9NY84 501 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 TNPO3Q9Y5L0 923 aaKnown RBP14.91□□□□□ -0.02
UPF1-204ENST00000596842 FAM92AA1XBS5 289 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 MTMR11A4FU01 709 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 CLDN7O95471 211 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 HSMCR30P0CW71 290 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 CDKN2CP42773 168 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 TRAF3Q13114 568 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 BOP1Q14137 746 aaKnown RBP14.91□□□□□ -0.02
UPF1-204ENST00000596842 SF3B4Q15427 424 aaKnown RBP eCLIP14.91□□□□□ -0.025e-7■■■■□ 22.3
UPF1-204ENST00000596842 SBSNQ6UWP8 590 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 Q6ZPB1 254 aaPredicted RBP14.91□□□□□ -0.02
UPF1-204ENST00000596842 C8orf48Q96LL4 319 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 TUBA1CQ9BQE3 449 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 YTHDF1Q9BYJ9 559 aaKnown RBP14.91□□□□□ -0.02
UPF1-204ENST00000596842 ATG10Q9H0Y0 220 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 ABCG2Q9UNQ0 655 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 FAM32AQ9Y421 112 aaKnown RBP14.91□□□□□ -0.02
UPF1-204ENST00000596842 DRGXA6NNA5 263 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 RFXANKO14593 260 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 SEC24AO95486 1093 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 ESR1P03372 595 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 INHBBP09529 407 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 DBTP11182 482 aaKnown RBP14.91□□□□□ -0.02
UPF1-204ENST00000596842 PTGER3P43115 390 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 ZNF846Q147U1 533 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 DCP2Q8IU60 420 aaKnown RBP14.91□□□□□ -0.02
UPF1-204ENST00000596842 SCN3BQ9NY72 215 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 GPRC5BQ9NZH0 403 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 DNMT3LQ9UJW3 386 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 FBXO10Q9UK96 956 aa14.91□□□□□ -0.02
UPF1-204ENST00000596842 SAMHD1Q9Y3Z3 626 aaKnown RBP14.91□□□□□ -0.02
UPF1-204ENST00000596842 BCKDHAP12694 445 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 CDK5R2Q13319 367 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 ZNF362Q5T0B9 420 aaPredicted RBP14.9□□□□□ -0.02
UPF1-204ENST00000596842 GPR153Q6NV75 609 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 CEP68Q76N32 757 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 RTN4RL1Q86UN2 441 aaPredicted RBP14.9□□□□□ -0.02
UPF1-204ENST00000596842 WBP2Q969T9 261 aa14.9□□□□□ -0.02
UPF1-204ENST00000596842 ISG20Q96AZ6 181 aaKnown RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms