RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 MR1Q95460 341 aa17.12■□□□□ 0.33
SHKBP1-204ENST00000594862 MENTQ9BUN1 341 aa17.12■□□□□ 0.33
SHKBP1-204ENST00000594862 GEMIN8Q9NWZ8 242 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-204ENST00000594862 SPHK1Q9NYA1 384 aa17.12■□□□□ 0.33
SHKBP1-204ENST00000594862 PLAGL1Q9UM63 463 aa17.12■□□□□ 0.33
SHKBP1-204ENST00000594862 SRPK3Q9UPE1 567 aa17.12■□□□□ 0.33
SHKBP1-204ENST00000594862 POLHQ9Y253 713 aa17.12■□□□□ 0.33
SHKBP1-204ENST00000594862 ZNF839A8K0R7 811 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 MEN1O00255 615 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 EIF3FO00303 357 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 MATN4O95460 622 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 CATP04040 527 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 ENO3P13929 434 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 AGXTP21549 392 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 PTGIRP43119 386 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 POLE2P56282 527 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 GRB7Q14451 532 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 CRYMQ14894 314 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 SPANXN3Q5MJ09 141 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 C16orf46Q6P387 395 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 TLDC1Q6P9B6 456 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 CNSTQ6PJW8 725 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 SYVN1Q86TM6 617 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 KCNMB4Q86W47 210 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 DSELQ8IZU8 1212 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 LRRC39Q96DD0 335 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 FBXO5Q9UKT4 447 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 PYCARDQ9ULZ3 195 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 PLCL2Q9UPR0 1127 aa17.11■□□□□ 0.33
SHKBP1-204ENST00000594862 C9J4A7 227 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 OR2B3O76000 313 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 CD63P08962 238 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 RAB40ALP0C0E4 278 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 FAM87AP0C7U9 286 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 CBSLP0DN79 551 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 PTPN4P29074 926 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 OAS2P29728 719 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 RORAP35398 523 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 CBSP35520 551 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 HSD17B2P37059 387 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 SLC1A2P43004 574 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 GPS2Q13227 327 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 KCNAB2Q13303 367 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 KCTD19Q17RG1 926 aaPredicted RBP17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 ZNF789Q5FWF6 425 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 ZC3H12BQ5HYM0 836 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 UGT3A1Q6NUS8 523 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 KIAA0408Q6ZU52 694 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 ZNF605Q86T29 641 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 TRIM73Q86UV7 250 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 KLHL7Q8IXQ5 586 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 EXD3Q8N9H8 876 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 LINC01555Q8NAE3 123 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 PROKR1Q8TCW9 393 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 NRTNQ99748 197 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 EBNA1BP2Q99848 306 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 TRIM56Q9BRZ2 755 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 KLHL25Q9H0H3 589 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 ACTL8Q9H568 366 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 PADI2Q9Y2J8 665 aa17.1■□□□□ 0.33
SHKBP1-204ENST00000594862 B8ZZF3 427 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 VPS26AO75436 327 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 F8A1P23610 371 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 PEBP1P30086 187 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 CLCN7P51798 805 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 CTBP1Q13363 440 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 ARHGAP19Q14CB8 494 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 SF1Q15637 639 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 DENND6AQ8IWF6 608 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 SYTL1Q8IYJ3 562 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 FBXO15Q8NCQ5 510 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 BBOF1Q8ND07 529 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 THAP4Q8WY91 577 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 DLG3Q92796 817 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 SNF8Q96H20 258 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 DHRS4Q9BTZ2 278 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 NLNQ9BYT8 704 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 SEMA4CQ9C0C4 833 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 FBXO6Q9NRD1 293 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 STARD5Q9NSY2 213 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 PCMTD2Q9NV79 361 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 IL1RAPL1Q9NZN1 696 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 MRPS18BQ9Y676 258 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 NFS1Q9Y697 457 aa17.09■□□□□ 0.33
SHKBP1-204ENST00000594862 TARM1B6A8C7 271 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 ZSCAN9O15535 394 aaPredicted RBP17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 ZNF749O43361 778 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 PSIP1O75475 530 aaKnown RBP17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 MPC1LP0DKB6 136 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 MAGP20916 626 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 IVDP26440 423 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 BDKRB1P46663 353 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 GABRA4P48169 554 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 DHX9Q08211 1270 aaKnown RBP17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 ERV3-1Q14264 604 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 HIF1AQ16665 826 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 UGT8Q16880 541 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 KLHL38Q2WGJ6 581 aa17.08■□□□□ 0.32
SHKBP1-204ENST00000594862 DEFB109BQ30KR1 87 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms