RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 PMP22Q01453 160 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 ACTN3Q08043 901 aaPredicted RBP3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 C2orf54Q08AI8 447 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 STK4Q13043 487 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 ITGB3BPQ13352 177 aaPredicted RBP3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 PTGISQ16647 500 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 CAVIN4Q5BKX8 364 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 WLSQ5T9L3 541 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 AGBL2Q5U5Z8 902 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 FBXO46Q6PJ61 603 aaPredicted RBP3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 ZNF852Q6ZMS4 543 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 ADGRA1Q86SQ6 560 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 CCDC50Q8IVM0 306 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 ZC3H3Q8IXZ2 948 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 ACTRT1Q8TDG2 376 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 SDR42E1Q8WUS8 393 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 ST8SIA4Q92187 359 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 P3H4Q92791 437 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 NSUN4Q96CB9 384 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 CABS1Q96KC9 395 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 CAPZA3Q96KX2 299 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 ATP6V1G3Q96LB4 118 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 CNOT6LQ96LI5 555 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 MTMR9Q96QG7 549 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 BBS4Q96RK4 519 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 CCT8L2Q96SF2 557 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 IFIH1Q9BYX4 1025 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 PAIP1Q9H074 479 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 ZMYND12Q9H0C1 365 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 NOD2Q9HC29 1040 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 HAUS2Q9NVX0 235 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 TMEM160Q9NX00 188 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 BARHL2Q9NY43 387 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 TTC7AQ9ULT0 858 aaPredicted RBP3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 TFR2Q9UP52 801 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 FLT1P17948 1338 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 DUOX1Q9NRD9 1551 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 NUP98P52948 1817 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 NHSL1Q5SYE7 1610 aa3.88□□□□□ -1.79
SMCHD1-208ENST00000583344 COL5A2P05997 1499 aaPredicted RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 IGKV3D-20A0A0C4DH25 116 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 ESYT2A0FGR8 921 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 GMNCA6NCL1 334 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 ANKRD65E5RJM6 399 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 CCDC188H7C350 402 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 NDUFAB1O14561 156 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 P4HA2O15460 535 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 NOL4O94818 638 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 KIAA0754O94854 1291 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 MMP2P08253 660 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 PLEKP08567 350 aaPredicted RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 PAEPP09466 180 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 OR52Z1P0C646 297 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 CCDC172P0C7W6 258 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 AKR1B1P15121 316 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 ALOX12P18054 663 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 CALRP27797 417 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 GNA11P29992 359 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 CORO1AP31146 461 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 KLK7P49862 253 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 CCR5P51681 352 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 CCR9P51686 369 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 EFNA5P52803 228 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 ISL1P61371 349 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 DYNLL1P63167 89 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 CUL1Q13616 776 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 VEPH1Q14D04 833 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 TSTQ16762 297 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 ZCWPW2Q504Y3 356 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 SGO1Q5FBB7 561 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 MAP3K21Q5TCX8 1036 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 C12orf60Q5U649 245 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 NAA35Q5VZE5 725 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 ACAD10Q6JQN1 1059 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 C8orf74Q6P047 294 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 FAM43BQ6ZT52 329 aaPredicted RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 SLFN11Q7Z7L1 901 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 ADGRG6Q86SQ4 1221 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 NLRP14Q86W24 1093 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 RASGEF1CQ8N431 466 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 SPEM1Q8N4L4 309 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 ZNF713Q8N859 430 aaPredicted RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 USP38Q8NB14 1042 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 LSM14AQ8ND56 463 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 LRRC15Q8TF66 581 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 ZNF473Q8WTR7 871 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 ATP6V1E2Q96A05 226 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 ZNF524Q96C55 264 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 LRRC45Q96CN5 670 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 CALML4Q96GE6 196 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 RUFY1Q96T51 708 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 PCYT2Q99447 389 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 CMKLR1Q99788 373 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 SPZ1Q9BXG8 430 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 MOV10L1Q9BXT6 1211 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 CRNKL1Q9BZJ0 848 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 TAOK3Q9H2K8 898 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 VCPKMTQ9H867 229 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 EPB41L5Q9HCM4 733 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 C6orf50Q9HD87 102 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 178.8 ms