RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 NDUFS3O75489 264 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 SLCO2B1O94956 709 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 VAPBO95292 243 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 ARNTP27540 789 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 VPS41P49754 854 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 RAB28P51157 221 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 KIR2DS3Q14952 304 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 SLC5A12Q1EHB4 618 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 MLIPQ5VWP3 458 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 LRRC8BQ6P9F7 803 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 TAX1BP1Q86VP1 789 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 DNAJC22Q8N4W6 341 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 OTUD6BQ8N6M0 293 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 EFCAB3Q8N7B9 438 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 GALNT11Q8NCW6 608 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 IP6K3Q96PC2 410 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 PSMG3-AS1Q96PY0 264 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 KIFC1Q9BW19 673 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 MAP4K5Q9Y4K4 846 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 NBASA2RRP1 2371 aa19.71■□□□□ 0.75
SHMT1-209ENST00000582653 MED13Q9UHV7 2174 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 DPM1O60762 260 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 AVILO75366 819 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 GP1BBP13224 206 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 TPSB2P20231 275 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 MAGP20916 626 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 CD9P21926 228 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 EIF3BP55884 814 aaKnown RBP19.7■□□□□ 0.74
SHMT1-209ENST00000582653 DCDP81605 110 aaKnown RBP19.7■□□□□ 0.74
SHMT1-209ENST00000582653 TPSAB1Q15661 275 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 TLDC1Q6P9B6 456 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 UNC5DQ6UXZ4 953 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 RAB43Q86YS6 212 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 ZNF655Q8N720 491 aaPredicted RBP19.7■□□□□ 0.74
SHMT1-209ENST00000582653 MS4A14Q96JA4 679 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 NUDT9Q9BW91 350 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 DHCR7Q9UBM7 475 aaKnown RBP19.7■□□□□ 0.74
SHMT1-209ENST00000582653 RUVBL2Q9Y230 463 aaKnown RBP19.7■□□□□ 0.74
SHMT1-209ENST00000582653 NFS1Q9Y697 457 aa19.7■□□□□ 0.74
SHMT1-209ENST00000582653 TNRC6AQ8NDV7 1962 aaKnown RBP19.7■□□□□ 0.74
SHMT1-209ENST00000582653 SEC16AO15027 2179 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 KRT87PA6NCN2 255 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 A6NL46 340 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 AP3B1O00203 1094 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 SORBS2O94875 1100 aaKnown RBP19.69■□□□□ 0.74
SHMT1-209ENST00000582653 SLC9A5Q14940 896 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 TMED2Q15363 201 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 CCSMST1Q4G0I0 132 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 CTSL3PQ5NE16 218 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 JMJD6Q6NYC1 403 aaPredicted RBP19.69■□□□□ 0.74
SHMT1-209ENST00000582653 TTC27Q6P3X3 843 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 DCUN1D3Q8IWE4 304 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 MPP5Q8N3R9 675 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 PROKR1Q8TCW9 393 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 GBP5Q96PP8 586 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 PANX3Q96QZ0 392 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 SMAD5Q99717 465 aaKnown RBP19.69■□□□□ 0.74
SHMT1-209ENST00000582653 TRIM56Q9BRZ2 755 aaKnown RBP19.69■□□□□ 0.74
SHMT1-209ENST00000582653 HOMER3Q9NSC5 361 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 IRAK4Q9NWZ3 460 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 GPR83Q9NYM4 423 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 GNPTGQ9UJJ9 305 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 TSR3Q9UJK0 312 aaKnown RBP19.69■□□□□ 0.74
SHMT1-209ENST00000582653 PLCL2Q9UPR0 1127 aa19.69■□□□□ 0.74
SHMT1-209ENST00000582653 PTPN13Q12923 2485 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 ZSCAN9O15535 394 aaPredicted RBP19.68■□□□□ 0.74
SHMT1-209ENST00000582653 RPN2P04844 631 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 RPS3P23396 243 aaKnown RBP eCLIP19.68■□□□□ 0.74
SHMT1-209ENST00000582653 FMO4P31512 558 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 GRIA3P42263 894 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 FOXL2P58012 376 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 CDK16Q00536 496 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 GPS1Q13098 491 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 ATP1A4Q13733 1029 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 KCNJ11Q14654 390 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 ANKRD22Q5VYY1 191 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 OTOAQ7RTW8 1153 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 TMEM151BQ8IW70 566 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 OR2L8Q8NGY9 312 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 SKA2Q8WVK7 121 aaPredicted RBP19.68■□□□□ 0.74
SHMT1-209ENST00000582653 FAM136AQ96C01 138 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 BIRC8Q96P09 236 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 MRM3Q9HC36 420 aaKnown RBP19.68■□□□□ 0.74
SHMT1-209ENST00000582653 EURLQ9NYK6 297 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.68■□□□□ 0.74
SHMT1-209ENST00000582653 C5AR2Q9P296 337 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 IFT80Q9P2H3 777 aaPredicted RBP19.68■□□□□ 0.74
SHMT1-209ENST00000582653 GPN3Q9UHW5 284 aaPredicted RBP19.68■□□□□ 0.74
SHMT1-209ENST00000582653 SLC39A10Q9ULF5 831 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 SOX13Q9UN79 622 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 DOPEY2Q9Y3R5 2298 aa19.68■□□□□ 0.74
SHMT1-209ENST00000582653 PCSK5Q92824 1860 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 MAST4O15021 2626 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 RASGRF2O14827 1237 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 KRT14P02533 472 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 GNLYP22749 145 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 OTX2P32243 289 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 BDKRB1P46663 353 aa19.67■□□□□ 0.74
SHMT1-209ENST00000582653 SF1Q15637 639 aaKnown RBP19.67■□□□□ 0.74
SHMT1-209ENST00000582653 MRPL14Q6P1L8 145 aaKnown RBP19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms