RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 MPC1LP0DKB6 136 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 CBSLP0DN79 551 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 ERVK-10P10266 1014 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 LIFP15018 202 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 CBSP35520 551 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 STAT5AP42229 794 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 SKIV2L2P42285 1042 aaKnown RBP12.94□□□□□ -0.34
CLK3-216ENST00000564468 RPL21P46778 160 aaKnown RBP12.94□□□□□ -0.34
CLK3-216ENST00000564468 CLCN7P51798 805 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 MC1RQ01726 317 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 C2orf54Q08AI8 447 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 CBLBQ13191 982 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 FRG1Q14331 258 aaKnown RBP12.94□□□□□ -0.34
CLK3-216ENST00000564468 GPR19Q15760 415 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 KLHL38Q2WGJ6 581 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 ACSBG2Q5FVE4 666 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 PWWP2BQ6NUJ5 590 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 FBXO38Q6PIJ6 1188 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 CNSTQ6PJW8 725 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 TIPARPQ7Z3E1 657 aaKnown RBP12.94□□□□□ -0.34
CLK3-216ENST00000564468 TMEM126BQ8IUX1 230 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 CNTN4Q8IWV2 1026 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 C19orf47Q8N9M1 422 aaKnown RBP12.94□□□□□ -0.34
CLK3-216ENST00000564468 GALNT6Q8NCL4 622 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 FAM136AQ96C01 138 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 ZNF501Q96CX3 271 aaPredicted RBP12.94□□□□□ -0.34
CLK3-216ENST00000564468 CFAP36Q96G28 342 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 SLC45A3Q96JT2 553 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 C16orf45Q96MC5 204 aaPredicted RBP12.94□□□□□ -0.34
CLK3-216ENST00000564468 PPM1MQ96MI6 270 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 AARSD1Q9BTE6 412 aaKnown RBP12.94□□□□□ -0.34
CLK3-216ENST00000564468 TWSG1Q9GZX9 223 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 TAS2R13Q9NYV9 303 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 SPATA7Q9P0W8 599 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.94□□□□□ -0.34
CLK3-216ENST00000564468 CDC23Q9UJX2 597 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 KCND3Q9UK17 655 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 CORO1CQ9ULV4 474 aaPredicted RBP12.94□□□□□ -0.34
CLK3-216ENST00000564468 PCDHGA4Q9Y5G9 962 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 HECTD1Q9ULT8 2610 aa12.94□□□□□ -0.34
CLK3-216ENST00000564468 MDC1Q14676 2089 aaKnown RBP12.93□□□□□ -0.34
CLK3-216ENST00000564468 LOC101059948A0A1B0GTJ6 334 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 E7ESA3 106 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 KIF2AO00139 706 aaPredicted RBP12.93□□□□□ -0.34
CLK3-216ENST00000564468 EIF3HO15372 352 aaKnown RBP eCLIP12.93□□□□□ -0.34
CLK3-216ENST00000564468 RAD51CO43502 376 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 BANF1O75531 89 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 SCRG1O75711 98 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 KLK3P07288 261 aaPredicted RBP12.93□□□□□ -0.34
CLK3-216ENST00000564468 HBQ1P09105 142 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 ZNF28P17035 718 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 HSD17B2P37059 387 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 CARSP49589 748 aaKnown RBP12.93□□□□□ -0.34
CLK3-216ENST00000564468 RGS4P49798 205 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 MPP1Q00013 466 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 CAV1Q03135 178 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 ILF2Q12905 390 aaKnown RBP12.93□□□□□ -0.34
CLK3-216ENST00000564468 PDIA2Q13087 525 aaKnown RBP12.93□□□□□ -0.34
CLK3-216ENST00000564468 GRB7Q14451 532 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 NAA25Q14CX7 972 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 STEAP4Q687X5 459 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 ZNF549Q6P9A3 640 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 ZNF572Q7Z3I7 529 aaPredicted RBP12.93□□□□□ -0.34
CLK3-216ENST00000564468 IGDCC3Q8IVU1 814 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 GPR135Q8IZ08 494 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 HMGCLL1Q8TB92 370 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 GPR21Q99679 349 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 MENTQ9BUN1 341 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 FAM117AQ9C073 453 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 SLC7A5P2Q9GIP4 190 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 SPHK1Q9NYA1 384 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 TRMT6Q9UJA5 497 aaKnown RBP12.93□□□□□ -0.34
CLK3-216ENST00000564468 PCDHB3Q9Y5E6 796 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 NFS1Q9Y697 457 aa12.93□□□□□ -0.34
CLK3-216ENST00000564468 B8ZZF3 427 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 C21orf140B9A014 251 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 TMEM150CB9EJG8 249 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 ZBTB14O43829 449 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 PSIP1O75475 530 aaKnown RBP12.92□□□□□ -0.34
CLK3-216ENST00000564468 URI1O94763 535 aaPredicted RBP12.92□□□□□ -0.34
CLK3-216ENST00000564468 ITGB2P05107 769 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 PVRP15151 417 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 CYP2A7P20853 494 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 OAS2P29728 719 aaKnown RBP12.92□□□□□ -0.34
CLK3-216ENST00000564468 DLSTP36957 453 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 BDKRB1P46663 353 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 ITGA1P56199 1179 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 MGAT5Q09328 741 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 SRSF6Q13247 344 aaKnown RBP12.92□□□□□ -0.34
CLK3-216ENST00000564468 ARHGAP19Q14CB8 494 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 SF1Q15637 639 aaKnown RBP12.92□□□□□ -0.34
CLK3-216ENST00000564468 HP1BP3Q5SSJ5 553 aaPredicted RBP12.92□□□□□ -0.34
CLK3-216ENST00000564468 TEDDM1Q5T9Z0 273 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 ANKMY2Q8IV38 441 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 UNC5BQ8IZJ1 945 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 LINC01555Q8NAE3 123 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 FBXO15Q8NCQ5 510 aaPredicted RBP12.92□□□□□ -0.34
CLK3-216ENST00000564468 FBXO36Q8NEA4 188 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 OR9A1PQ8NGU1 263 aa12.92□□□□□ -0.34
CLK3-216ENST00000564468 PYROXD1Q8WU10 500 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms