RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 KIFC1Q9BW19 673 aa17.03■□□□□ 0.32
NME3-205ENST00000563854 SOX13Q9UN79 622 aa17.03■□□□□ 0.32
NME3-205ENST00000563854 PLCL2Q9UPR0 1127 aa17.03■□□□□ 0.32
NME3-205ENST00000563854 PADI2Q9Y2J8 665 aa17.03■□□□□ 0.32
NME3-205ENST00000563854 AP1M2Q9Y6Q5 423 aa17.03■□□□□ 0.32
NME3-205ENST00000563854 SPTBP11277 2137 aa17.03■□□□□ 0.32
NME3-205ENST00000563854 A6NL46 340 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 RASGRF2O14827 1237 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 NIPSNAP2O75323 286 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 SLCO2B1O94956 709 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 RPS3P23396 243 aaKnown RBP eCLIP17.02■□□□□ 0.32
NME3-205ENST00000563854 ARNTP27540 789 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 GABRA4P48169 554 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 SARNPP82979 210 aaKnown RBP17.02■□□□□ 0.32
NME3-205ENST00000563854 ATP1A4Q13733 1029 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 GRB7Q14451 532 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 CTSL3PQ5NE16 218 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 ANKRD22Q5VYY1 191 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 ZNF385CQ66K41 422 aaPredicted RBP17.02■□□□□ 0.32
NME3-205ENST00000563854 OR2L8Q8NGY9 312 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 ADAMTS17Q8TE56 1095 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 MAGOHBQ96A72 148 aaKnown RBP17.02■□□□□ 0.32
NME3-205ENST00000563854 SLC22A18Q96BI1 424 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 DPH2Q9BQC3 489 aaPredicted RBP17.02■□□□□ 0.32
NME3-205ENST00000563854 TRIM56Q9BRZ2 755 aaKnown RBP17.02■□□□□ 0.32
NME3-205ENST00000563854 NDC1Q9BTX1 674 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 MRM3Q9HC36 420 aaKnown RBP17.02■□□□□ 0.32
NME3-205ENST00000563854 IL1RAPL1Q9NZN1 696 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 SAMD15Q9P1V8 674 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 IFT80Q9P2H3 777 aaPredicted RBP17.02■□□□□ 0.32
NME3-205ENST00000563854 NDOR1Q9UHB4 597 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 CRYL1Q9Y2S2 319 aa17.02■□□□□ 0.32
NME3-205ENST00000563854 GOLGA8MH3BSY2 632 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 KPNA5O15131 536 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 PFDN6O15212 129 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 ZNF185O15231 689 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 S1PR4O95977 384 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 PAMP19021 973 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 FOXK1P85037 733 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 KCNJ11Q14654 390 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 SF1Q15637 639 aaKnown RBP17.01■□□□□ 0.31
NME3-205ENST00000563854 CCSMST1Q4G0I0 132 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 RNF187Q5TA31 235 aaPredicted RBP17.01■□□□□ 0.31
NME3-205ENST00000563854 RHBDD2Q6NTF9 364 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 TLDC1Q6P9B6 456 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 RAB43Q86YS6 212 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 DNAJC22Q8N4W6 341 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 RAB42Q8N4Z0 105 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 ZNF669Q96BR6 464 aaPredicted RBP17.01■□□□□ 0.31
NME3-205ENST00000563854 FOPNLQ96NB1 174 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 C17orf62Q9BQA9 187 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 MENTQ9BUN1 341 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 RAB11FIP5Q9BXF6 653 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 INTS7Q9NVH2 962 aaKnown RBP17.01■□□□□ 0.31
NME3-205ENST00000563854 EURLQ9NYK6 297 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 SRPK3Q9UPE1 567 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 PLAAQ9Y263 795 aa17.01■□□□□ 0.31
NME3-205ENST00000563854 PTRH2Q9Y3E5 179 aaKnown RBP17.01■□□□□ 0.31
NME3-205ENST00000563854 TNRC6AQ8NDV7 1962 aaKnown RBP17■□□□□ 0.31
NME3-205ENST00000563854 H3BMH7 237 aa17■□□□□ 0.31
NME3-205ENST00000563854 C1orf105O95561 183 aa17■□□□□ 0.31
NME3-205ENST00000563854 F7P08709 466 aaPredicted RBP17■□□□□ 0.31
NME3-205ENST00000563854 CHRM3P20309 590 aa17■□□□□ 0.31
NME3-205ENST00000563854 ALAS2P22557 587 aa17■□□□□ 0.31
NME3-205ENST00000563854 PSMB5P28074 263 aa17■□□□□ 0.31
NME3-205ENST00000563854 FOLR3P41439 243 aa17■□□□□ 0.31
NME3-205ENST00000563854 GRIA3P42263 894 aa17■□□□□ 0.31
NME3-205ENST00000563854 MLLT10P55197 1068 aa17■□□□□ 0.31
NME3-205ENST00000563854 FOXL2P58012 376 aa17■□□□□ 0.31
NME3-205ENST00000563854 DCDP81605 110 aaKnown RBP17■□□□□ 0.31
NME3-205ENST00000563854 RAPSNQ13702 412 aa17■□□□□ 0.31
NME3-205ENST00000563854 KIAA0930Q6ICG6 404 aaPredicted RBP17■□□□□ 0.31
NME3-205ENST00000563854 MCATQ8IVS2 390 aaKnown RBP17■□□□□ 0.31
NME3-205ENST00000563854 ZBTB2Q8N680 514 aa17■□□□□ 0.31
NME3-205ENST00000563854 PROKR1Q8TCW9 393 aa17■□□□□ 0.31
NME3-205ENST00000563854 LPGAT1Q92604 370 aa17■□□□□ 0.31
NME3-205ENST00000563854 RAD51AP1Q96B01 352 aa17■□□□□ 0.31
NME3-205ENST00000563854 GBP5Q96PP8 586 aa17■□□□□ 0.31
NME3-205ENST00000563854 DHRS4Q9BTZ2 278 aa17■□□□□ 0.31
NME3-205ENST00000563854 CHRNA10Q9GZZ6 450 aa17■□□□□ 0.31
NME3-205ENST00000563854 G3BP2Q9UN86 482 aaKnown RBP17■□□□□ 0.31
NME3-205ENST00000563854 JRKLQ9Y4A0 524 aa17■□□□□ 0.31
NME3-205ENST00000563854 UBR5O95071 2799 aaPredicted RBP17■□□□□ 0.31
NME3-205ENST00000563854 SNRNP200O75643 2136 aaKnown RBP16.99■□□□□ 0.31
NME3-205ENST00000563854 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.99■□□□□ 0.31
NME3-205ENST00000563854 E5RI56 91 aa16.99■□□□□ 0.31
NME3-205ENST00000563854 TYSND1Q2T9J0 566 aa16.99■□□□□ 0.31
NME3-205ENST00000563854 NKAIN1Q4KMZ8 207 aa16.99■□□□□ 0.31
NME3-205ENST00000563854 FIGLAQ6QHK4 219 aa16.99■□□□□ 0.31
NME3-205ENST00000563854 PBKQ96KB5 322 aa16.99■□□□□ 0.31
NME3-205ENST00000563854 BIRC8Q96P09 236 aa16.99■□□□□ 0.31
NME3-205ENST00000563854 MIPEPQ99797 713 aa16.99■□□□□ 0.31
NME3-205ENST00000563854 PCDHGA9Q9Y5G4 932 aaKnown RBP16.99■□□□□ 0.31
NME3-205ENST00000563854 MRFAP1Q9Y605 127 aa16.99■□□□□ 0.31
NME3-205ENST00000563854 TTLL8A6PVC2 850 aa16.98■□□□□ 0.31
NME3-205ENST00000563854 H3BMM5 538 aa16.98■□□□□ 0.31
NME3-205ENST00000563854 PGRMC1O00264 195 aaKnown RBP16.98■□□□□ 0.31
NME3-205ENST00000563854 ESR1P03372 595 aa16.98■□□□□ 0.31
NME3-205ENST00000563854 OGNP20774 298 aaKnown RBP16.98■□□□□ 0.31
NME3-205ENST00000563854 MCM3P25205 808 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms