RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ALDH3A1P30838 453 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 RAB28P51157 221 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 PNLIPRP1P54315 467 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 SLC14A1Q13336 389 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 FASTKQ14296 549 aaKnown RBP16.08■□□□□ 0.16
VPS4A-202ENST00000562754 PLCL1Q15111 1095 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 NR0B2Q15466 257 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 CYP2A13Q16696 494 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 INAVAQ3KP66 663 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 GUSBP11Q6P575 273 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 AGTRAPQ6RW13 159 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 C10orf107Q8IVU9 208 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 LINC01555Q8NAE3 123 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 PPFIBP2Q8ND30 876 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 LCN9Q8WX39 176 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 ESAMQ96AP7 390 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 PHF21BQ96EK2 531 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 TBC1D10AQ9BXI6 508 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 ATG10Q9H0Y0 220 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 UCK1Q9HA47 277 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 WWOXQ9NZC7 414 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 NCKIPSDQ9NZQ3 722 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 TMCO1Q9UM00 188 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 RP1P56715 2156 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 FAM186AA6NE01 2351 aa16.08■□□□□ 0.16
VPS4A-202ENST00000562754 FRYLO94915 3013 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 NUDT21O43809 227 aaKnown RBP16.07■□□□□ 0.16
VPS4A-202ENST00000562754 FOXD2O60548 495 aaPredicted RBP16.07■□□□□ 0.16
VPS4A-202ENST00000562754 SIX3O95343 332 aaPredicted RBP16.07■□□□□ 0.16
VPS4A-202ENST00000562754 BPGMP07738 259 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 CHN1P15882 459 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 GLB1P16278 677 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 SHMT2P34897 504 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 SLC6A12P48065 614 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 HSPA7P48741 367 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 ALDH18A1P54886 795 aaKnown RBP16.07■□□□□ 0.16
VPS4A-202ENST00000562754 NR1D2Q14995 579 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 ARHGAP19Q14CB8 494 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 HHATQ5VTY9 493 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 ANKS6Q68DC2 871 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 TAX1BP1Q86VP1 789 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 NAXDQ8IW45 347 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 SYTL1Q8IYJ3 562 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 TCAIMQ8N3R3 496 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 C2orf73Q8N5S3 287 aaPredicted RBP16.07■□□□□ 0.16
VPS4A-202ENST00000562754 OR4E2Q8NGC2 313 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 OR2L8Q8NGY9 312 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 OR56A3Q8NH54 315 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 ATL1Q8WXF7 558 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 CCDC74AQ96AQ1 378 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 TMEM237Q96Q45 408 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 RAB11FIP5Q9BXF6 653 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 TWSG1Q9GZX9 223 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 CNOT10Q9H9A5 744 aaKnown RBP16.07■□□□□ 0.16
VPS4A-202ENST00000562754 ACSS2Q9NR19 701 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 OXSMQ9NWU1 459 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 LRIT1Q9P2V4 623 aa16.07■□□□□ 0.16
VPS4A-202ENST00000562754 SNRNP200O75643 2136 aaKnown RBP16.07■□□□□ 0.16
VPS4A-202ENST00000562754 A0A1W2PPV9 198 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 RHPN2P1A8MT19 583 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 E7ENX8 843 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 STX16-NPEPL1H3BU86 382 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 BTN3A3O00478 584 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 STX16O14662 325 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 SH3BP5O60239 455 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 IPO13O94829 963 aaKnown RBP16.06■□□□□ 0.16
VPS4A-202ENST00000562754 RPS17P08708 135 aaKnown RBP16.06■□□□□ 0.16
VPS4A-202ENST00000562754 CKMT1AP12532 417 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 EEF1DP29692 281 aaKnown RBP16.06■□□□□ 0.16
VPS4A-202ENST00000562754 PEBP1P30086 187 aaKnown RBP16.06■□□□□ 0.16
VPS4A-202ENST00000562754 GGT5P36269 586 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 GDF5P43026 501 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 HNMTP50135 292 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 ATP1A2P50993 1020 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 PRKAA2P54646 552 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 TBPL1P62380 186 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 TAP2Q03519 686 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 BIRC2Q13490 618 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 NAE1Q13564 534 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 PTCHD3Q3KNS1 767 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 PERM1Q5SV97 790 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 STPG1Q5TH74 334 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 AMIGO1Q86WK6 493 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 KLHDC8AQ8IYD2 350 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 ADGRF3Q8IZF5 1079 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 HMGCLL1Q8TB92 370 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 BAHD1Q8TBE0 780 aaPredicted RBP16.06■□□□□ 0.16
VPS4A-202ENST00000562754 SETD7Q8WTS6 366 aaKnown RBP16.06■□□□□ 0.16
VPS4A-202ENST00000562754 RSC1A1Q92681 617 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 SH3KBP1Q96B97 665 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 PYCR2Q96C36 320 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 PAIP2Q9BPZ3 127 aaKnown RBP16.06■□□□□ 0.16
VPS4A-202ENST00000562754 SRMSQ9H3Y6 488 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 OGFRQ9NZT2 677 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 LNPEPQ9UIQ6 1025 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 WDR87Q6ZQQ6 2873 aa16.06■□□□□ 0.16
VPS4A-202ENST00000562754 CPED1A4D0V7 1026 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 WDR91A4D1P6 747 aa16.05■□□□□ 0.16
VPS4A-202ENST00000562754 EME2A4GXA9 379 aaPredicted RBP16.05■□□□□ 0.16
VPS4A-202ENST00000562754 FAM221BA6H8Z2 402 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms