RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ZDHHC1Q8WTX9 485 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 DTD2Q96FN9 168 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 TRMOQ9BU70 441 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 GAREM1Q9H706 876 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 VCX3AQ9NNX9 186 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 LTB4R2Q9NPC1 389 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 KLHL28Q9NXS3 571 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 RPS6KB2Q9UBS0 482 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 A8MT66 165 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 SLC28A1O00337 649 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 PIP5K1BO14986 540 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 VEGFDO43915 354 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 ZNF37AP17032 561 aaPredicted RBP9.01□□□□□ -0.97
VPS39-205ENST00000562258 BTN3A2P78410 334 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 CEP97Q8IW35 865 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 C2CD4AQ8NCU7 369 aaPredicted RBP9.01□□□□□ -0.97
VPS39-205ENST00000562258 TMIEQ8NEW7 156 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 OR5AR1Q8NGP9 310 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 RDH11Q8TC12 318 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 DCAKDQ8WVC6 231 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 EME1Q96AY2 570 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 C19orf60Q96EN9 201 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 VPS50Q96JG6 964 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 TFB2MQ9H5Q4 396 aaKnown RBP9.01□□□□□ -0.97
VPS39-205ENST00000562258 MRGBPQ9NV56 204 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 DGKBQ9Y6T7 804 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 METAP1P53582 386 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 CDKN2DP55273 166 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 CPTPQ5TA50 214 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 ARHGAP40Q5TG30 622 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 C1orf189Q5VU69 101 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 PNCKQ6P2M8 343 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 MR1Q95460 341 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 JSRP1Q96MG2 331 aaPredicted RBP9.01□□□□□ -0.97
VPS39-205ENST00000562258 SLC32A1Q9H598 525 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 SERTAD3Q9UJW9 196 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 SCN10AQ9Y5Y9 1956 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 C9J4A7 227 aa9□□□□□ -0.97
VPS39-205ENST00000562258 HS6ST1O60243 411 aa9□□□□□ -0.97
VPS39-205ENST00000562258 SLC16A8O95907 504 aa9□□□□□ -0.97
VPS39-205ENST00000562258 IVDP26440 423 aa9□□□□□ -0.97
VPS39-205ENST00000562258 PDHA2P29803 388 aa9□□□□□ -0.97
VPS39-205ENST00000562258 DUSP3P51452 185 aaPredicted RBP9□□□□□ -0.97
VPS39-205ENST00000562258 STXBP1P61764 594 aaKnown RBP9□□□□□ -0.97
VPS39-205ENST00000562258 CHRNB3Q05901 458 aa9□□□□□ -0.97
VPS39-205ENST00000562258 TRIP10Q15642 601 aa9□□□□□ -0.97
VPS39-205ENST00000562258 ZYG11AQ6WRX3 759 aa9□□□□□ -0.97
VPS39-205ENST00000562258 AMIGO1Q86WK6 493 aa9□□□□□ -0.97
VPS39-205ENST00000562258 PIH1D2Q8WWB5 315 aa9□□□□□ -0.97
VPS39-205ENST00000562258 NAF1Q96HR8 494 aaKnown RBP9□□□□□ -0.97
VPS39-205ENST00000562258 PLEKHA8Q96JA3 519 aa9□□□□□ -0.97
VPS39-205ENST00000562258 KCNA7Q96RP8 456 aa9□□□□□ -0.97
VPS39-205ENST00000562258 PKMYT1Q99640 499 aa9□□□□□ -0.97
VPS39-205ENST00000562258 OLFM1Q99784 485 aa9□□□□□ -0.97
VPS39-205ENST00000562258 SLC25A23Q9BV35 468 aa9□□□□□ -0.97
VPS39-205ENST00000562258 GIMAP2Q9UG22 337 aa9□□□□□ -0.97
VPS39-205ENST00000562258 MATN4O95460 622 aa9□□□□□ -0.97
VPS39-205ENST00000562258 ATP6V1B2P21281 511 aa9□□□□□ -0.97
VPS39-205ENST00000562258 OPRD1P41143 372 aa9□□□□□ -0.97
VPS39-205ENST00000562258 SLC25A3Q00325 362 aa9□□□□□ -0.97
VPS39-205ENST00000562258 NFKB2Q00653 900 aa9□□□□□ -0.97
VPS39-205ENST00000562258 CAMK1Q14012 370 aa9□□□□□ -0.97
VPS39-205ENST00000562258 DEFB134Q4QY38 66 aa9□□□□□ -0.97
VPS39-205ENST00000562258 TMEM198Q66K66 360 aa9□□□□□ -0.97
VPS39-205ENST00000562258 UBALD2Q8IYN6 164 aa9□□□□□ -0.97
VPS39-205ENST00000562258 SMRP1Q8NCR6 262 aa9□□□□□ -0.97
VPS39-205ENST00000562258 OR13H1Q8NG92 308 aa9□□□□□ -0.97
VPS39-205ENST00000562258 MMABQ96EY8 250 aaPredicted RBP9□□□□□ -0.97
VPS39-205ENST00000562258 SH3GL1Q99961 368 aa9□□□□□ -0.97
VPS39-205ENST00000562258 C17orf62Q9BQA9 187 aa9□□□□□ -0.97
VPS39-205ENST00000562258 RAB11FIP5Q9BXF6 653 aa9□□□□□ -0.97
VPS39-205ENST00000562258 PCBD2Q9H0N5 130 aa9□□□□□ -0.97
VPS39-205ENST00000562258 Q9H521 79 aa9□□□□□ -0.97
VPS39-205ENST00000562258 PNO1Q9NRX1 252 aaKnown RBP9□□□□□ -0.97
VPS39-205ENST00000562258 KLF15Q9UIH9 416 aa9□□□□□ -0.97
VPS39-205ENST00000562258 ANGPTL2Q9UKU9 493 aa9□□□□□ -0.97
VPS39-205ENST00000562258 CNOT6Q9ULM6 557 aaKnown RBP9□□□□□ -0.97
VPS39-205ENST00000562258 COL6A6A6NMZ7 2263 aa9□□□□□ -0.97
VPS39-205ENST00000562258 TRAFD1O14545 582 aaPredicted RBP9□□□□□ -0.97
VPS39-205ENST00000562258 CASQ2O14958 399 aaPredicted RBP9□□□□□ -0.97
VPS39-205ENST00000562258 PENKP01210 267 aaPredicted RBP9□□□□□ -0.97
VPS39-205ENST00000562258 KLK1P06870 262 aa9□□□□□ -0.97
VPS39-205ENST00000562258 C8orf89P0DMQ9 161 aa9□□□□□ -0.97
VPS39-205ENST00000562258 SPTBP11277 2137 aa9□□□□□ -0.97
VPS39-205ENST00000562258 MASP1P48740 699 aa9□□□□□ -0.97
VPS39-205ENST00000562258 IRX1P78414 480 aaPredicted RBP9□□□□□ -0.97
VPS39-205ENST00000562258 TBL3Q12788 808 aaKnown RBP9□□□□□ -0.97
VPS39-205ENST00000562258 SEMA3BQ13214 749 aa9□□□□□ -0.97
VPS39-205ENST00000562258 HTR4Q13639 388 aa9□□□□□ -0.97
VPS39-205ENST00000562258 ATP6V1C2Q8NEY4 427 aa9□□□□□ -0.97
VPS39-205ENST00000562258 ZFP28Q8NHY6 868 aa9□□□□□ -0.97
VPS39-205ENST00000562258 DNASE1L2Q92874 299 aa9□□□□□ -0.97
VPS39-205ENST00000562258 RSPRY1Q96DX4 576 aa9□□□□□ -0.97
VPS39-205ENST00000562258 ZNF556Q9HAH1 456 aa9□□□□□ -0.97
VPS39-205ENST00000562258 RNF11Q9Y3C5 154 aa9□□□□□ -0.97
VPS39-205ENST00000562258 SNX13Q9Y5W8 968 aa9□□□□□ -0.97
VPS39-205ENST00000562258 TRPM7Q96QT4 1865 aa9□□□□□ -0.97
VPS39-205ENST00000562258 BIRC5O15392 142 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 C9P02748 559 aa8.99□□□□□ -0.97
VPS39-205ENST00000562258 UMPSP11172 480 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms