RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 OPTCQ9UBM4 332 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 MALT1Q9UDY8 824 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 RNF6Q9Y252 685 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 KLHL20Q9Y2M5 609 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 PCDHB9Q9Y5E1 797 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 LOC730098B7Z3J9 87 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 TLL1O43897 1013 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 GABARAPO95166 117 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 FHP07954 510 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 OR1G1P47890 313 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 ZFP36L2P47974 494 aaKnown RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 NKX3-2P78367 333 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 EFL1Q7Z2Z2 1120 aaKnown RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 NLGN4XQ8N0W4 816 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 NKAPQ8N5F7 415 aaKnown RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 ZNF548Q8NEK5 533 aaPredicted RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 GTF2H4Q92759 462 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 GTPBP3Q969Y2 492 aaKnown RBP11.08□□□□□ -0.64
LDLR-208ENST00000558518 CENPOQ9BU64 300 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 BOCQ9BWV1 1114 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 MMP28Q9H239 520 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 LRTM1Q9HBL6 345 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 SLC52A3Q9NQ40 469 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 C8orf4Q9NR00 106 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 MARCH2Q9P0N8 246 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 TMEM98Q9Y2Y6 226 aa11.08□□□□□ -0.64
LDLR-208ENST00000558518 LCHNA4D1U4 455 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 PABPN1LA6NDY0 278 aaKnown RBP11.07□□□□□ -0.64
LDLR-208ENST00000558518 CENPXA8MT69 81 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 E2F3O00716 465 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 RPS17P08708 135 aaKnown RBP11.07□□□□□ -0.64
LDLR-208ENST00000558518 BMP1P13497 986 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 PCMT1P22061 227 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 TACR1P25103 407 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 CYP2C18P33260 490 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 CASP3P42574 277 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 RAB25P57735 213 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 LRRC74AQ0VAA2 488 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 COL9A2Q14055 689 aaPredicted RBP11.07□□□□□ -0.64
LDLR-208ENST00000558518 MSANTD2Q6P1R3 559 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 TLK2Q86UE8 772 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 RGL4Q8IZJ4 473 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 PARP16Q8N5Y8 322 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 VANGL1Q8TAA9 524 aaPredicted RBP11.07□□□□□ -0.64
LDLR-208ENST00000558518 ARRDC2Q8TBH0 407 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 DYNC2LI1Q8TCX1 351 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 SERPINB11Q96P15 392 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 NEDD4LQ96PU5 975 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 CNPPD1Q9BV87 410 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 C1orf109Q9NX04 203 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 KLHL3Q9UH77 587 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 DNAJC25-GNG10A0A024R161 153 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 H3BM21 787 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 RGS14O43566 566 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 KCNE1P15382 129 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 FCGRTP55899 365 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 PPP2R2DQ66LE6 453 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 SUSD1Q6UWL2 747 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 MDGA1Q8NFP4 955 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 DNASE1L2Q92874 299 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 PYURFQ96I23 114 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 SH3GL1Q99961 368 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 DERL2Q9GZP9 239 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 MRM3Q9HC36 420 aaKnown RBP11.07□□□□□ -0.64
LDLR-208ENST00000558518 WBP11Q9Y2W2 641 aaKnown RBP11.07□□□□□ -0.64
LDLR-208ENST00000558518 PTCH2Q9Y6C5 1203 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 FFAR2O15552 330 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 SH3BP5O60239 455 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 NUAK1O60285 661 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 WDR47O94967 919 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 FGF1P05230 155 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 CCDC159P0C7I6 412 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 ITPKAP23677 461 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 DNAJB1P25685 340 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 GKP32189 559 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 EIF2DP41214 584 aaKnown RBP11.07□□□□□ -0.64
LDLR-208ENST00000558518 GNPDA1P46926 289 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 SNRPD2P62316 118 aaKnown RBP11.07□□□□□ -0.64
LDLR-208ENST00000558518 VLDLRP98155 873 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 IFITM2Q01629 132 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 SLC14A1Q13336 389 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 BCL7AQ4VC05 210 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 BRMS1LQ5PSV4 323 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 NXNL2Q5VZ03 156 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 OR2T5Q6IEZ7 315 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 SVOPLQ8N434 492 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 CAMKK1Q8N5S9 505 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 ST13P5Q8NFI4 369 aaPredicted RBP11.07□□□□□ -0.64
LDLR-208ENST00000558518 OR2T29Q8NH02 315 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 TMEM203Q969S6 136 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 CTRCQ99895 268 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 ELOVL6Q9H5J4 265 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 RHCGQ9UBD6 479 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 RAPGEFL1Q9UHV5 662 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 TMEFF2Q9UIK5 374 aaPredicted RBP11.07□□□□□ -0.64
LDLR-208ENST00000558518 DUSP12Q9UNI6 340 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 DLGAP4Q9Y2H0 992 aa11.07□□□□□ -0.64
LDLR-208ENST00000558518 MROH6A6NGR9 719 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 ZW10O43264 779 aa11.06□□□□□ -0.64
LDLR-208ENST00000558518 DYRK3O43781 588 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms