RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 GRB7Q14451 532 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 KCNJ11Q14654 390 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 IGFBP7Q16270 282 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 MLIPQ5VWP3 458 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 MRNIPQ6NTE8 343 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 RHBDD2Q6NTF9 364 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 TTC27Q6P3X3 843 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 CASC4Q6P4E1 433 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 SDCCAG8Q86SQ7 713 aaPredicted RBP15.73■□□□□ 0.11
VPS29-207ENST00000549970 LRRC6Q86X45 466 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 DNAJC22Q8N4W6 341 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 MAGOHBQ96A72 148 aaKnown RBP15.73■□□□□ 0.11
VPS29-207ENST00000549970 FAM136AQ96C01 138 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 MS4A14Q96JA4 679 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 SLC25A23Q9BV35 468 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.73■□□□□ 0.11
VPS29-207ENST00000549970 DHCR7Q9UBM7 475 aaKnown RBP15.73■□□□□ 0.11
VPS29-207ENST00000549970 TSR3Q9UJK0 312 aaKnown RBP15.73■□□□□ 0.11
VPS29-207ENST00000549970 PLCL2Q9UPR0 1127 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 NFS1Q9Y697 457 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 COL12A1Q99715 3063 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.72■□□□□ 0.11
VPS29-207ENST00000549970 RASGRF2O14827 1237 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 KPNA5O15131 536 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 TMEM63AO94886 807 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 SARNPP82979 210 aaKnown RBP15.72■□□□□ 0.11
VPS29-207ENST00000549970 SLC9A5Q14940 896 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 TYSND1Q2T9J0 566 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 ANKRD22Q5VYY1 191 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 TLDC1Q6P9B6 456 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 TTC23LQ6PF05 361 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 CNSTQ6PJW8 725 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 OR2L8Q8NGY9 312 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 SLC22A18Q96BI1 424 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 GBP5Q96PP8 586 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 TXLNGQ9NUQ3 528 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 GPN3Q9UHW5 284 aaPredicted RBP15.72■□□□□ 0.11
VPS29-207ENST00000549970 PADI2Q9Y2J8 665 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 CCDC88CQ9P219 2028 aa15.72■□□□□ 0.11
VPS29-207ENST00000549970 UBR5O95071 2799 aaPredicted RBP15.71■□□□□ 0.11
VPS29-207ENST00000549970 KRT87PA6NCN2 255 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 NIPSNAP2O75323 286 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 C1orf105O95561 183 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 S1PR4O95977 384 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 OTX2P32243 289 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 MAGEA6P43360 314 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 PGDP52209 483 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 FOXK1P85037 733 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 ATP1A4Q13733 1029 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 SF1Q15637 639 aaKnown RBP15.71■□□□□ 0.11
VPS29-207ENST00000549970 CCSMST1Q4G0I0 132 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 RNF187Q5TA31 235 aaPredicted RBP15.71■□□□□ 0.11
VPS29-207ENST00000549970 KIAA0930Q6ICG6 404 aaPredicted RBP15.71■□□□□ 0.11
VPS29-207ENST00000549970 RASGEF1CQ8N431 466 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 ZBTB2Q8N680 514 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 PROKR1Q8TCW9 393 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 LPGAT1Q92604 370 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 RAD51AP1Q96B01 352 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 PBKQ96KB5 322 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 FOPNLQ96NB1 174 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 BIRC8Q96P09 236 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 C17orf62Q9BQA9 187 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 TRIM56Q9BRZ2 755 aaKnown RBP15.71■□□□□ 0.11
VPS29-207ENST00000549970 NDC1Q9BTX1 674 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 DHRS4Q9BTZ2 278 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 RAB11FIP5Q9BXF6 653 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 INTS7Q9NVH2 962 aaKnown RBP15.71■□□□□ 0.11
VPS29-207ENST00000549970 EURLQ9NYK6 297 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 IL1RAPL1Q9NZN1 696 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 SRPK3Q9UPE1 567 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 CRYL1Q9Y2S2 319 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 JRKLQ9Y4A0 524 aa15.71■□□□□ 0.11
VPS29-207ENST00000549970 GOLGA8MH3BSY2 632 aa15.7■□□□□ 0.1
VPS29-207ENST00000549970 PFDN6O15212 129 aa15.7■□□□□ 0.1
VPS29-207ENST00000549970 ZNF185O15231 689 aa15.7■□□□□ 0.1
VPS29-207ENST00000549970 PAMP19021 973 aa15.7■□□□□ 0.1
VPS29-207ENST00000549970 OGNP20774 298 aaKnown RBP15.7■□□□□ 0.1
VPS29-207ENST00000549970 GRIA3P42263 894 aa15.7■□□□□ 0.1
VPS29-207ENST00000549970 MLLT10P55197 1068 aa15.7■□□□□ 0.1
VPS29-207ENST00000549970 DCDP81605 110 aaKnown RBP15.7■□□□□ 0.1
VPS29-207ENST00000549970 CAND1Q86VP6 1230 aaKnown RBP15.7■□□□□ 0.1
VPS29-207ENST00000549970 RAB43Q86YS6 212 aa15.7■□□□□ 0.1
VPS29-207ENST00000549970 MCATQ8IVS2 390 aaKnown RBP15.7■□□□□ 0.1
VPS29-207ENST00000549970 RAB42Q8N4Z0 105 aa15.7■□□□□ 0.1
VPS29-207ENST00000549970 ZNF669Q96BR6 464 aaPredicted RBP15.7■□□□□ 0.1
VPS29-207ENST00000549970 SAMD15Q9P1V8 674 aa15.7■□□□□ 0.1
VPS29-207ENST00000549970 IFT80Q9P2H3 777 aaPredicted RBP15.7■□□□□ 0.1
VPS29-207ENST00000549970 NDOR1Q9UHB4 597 aa15.7■□□□□ 0.1
VPS29-207ENST00000549970 PLAAQ9Y263 795 aa15.7■□□□□ 0.1
VPS29-207ENST00000549970 PTRH2Q9Y3E5 179 aaKnown RBP15.7■□□□□ 0.1
VPS29-207ENST00000549970 PCDHGA9Q9Y5G4 932 aaKnown RBP15.7■□□□□ 0.1
VPS29-207ENST00000549970 PCSK5Q92824 1860 aa15.69■□□□□ 0.1
VPS29-207ENST00000549970 A6NL46 340 aa15.69■□□□□ 0.1
VPS29-207ENST00000549970 H3BMM5 538 aa15.69■□□□□ 0.1
VPS29-207ENST00000549970 KLF7O75840 302 aaPredicted RBP15.69■□□□□ 0.1
VPS29-207ENST00000549970 ESR1P03372 595 aa15.69■□□□□ 0.1
VPS29-207ENST00000549970 F7P08709 466 aaPredicted RBP15.69■□□□□ 0.1
VPS29-207ENST00000549970 CHRM3P20309 590 aa15.69■□□□□ 0.1
VPS29-207ENST00000549970 ALAS2P22557 587 aa15.69■□□□□ 0.1
VPS29-207ENST00000549970 PSMB5P28074 263 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms