RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 PID1Q7Z2X4 250 aa12.22□□□□□ -0.45
SCAF11-208ENST00000546534 CDH24Q86UP0 819 aa12.22□□□□□ -0.45
SCAF11-208ENST00000546534 ZNF567Q8N184 647 aa12.22□□□□□ -0.45
SCAF11-208ENST00000546534 TFB1MQ8WVM0 346 aaKnown RBP12.22□□□□□ -0.45
SCAF11-208ENST00000546534 SYN2Q92777 582 aaPredicted RBP12.22□□□□□ -0.45
SCAF11-208ENST00000546534 ULK4Q96C45 1275 aa12.22□□□□□ -0.45
SCAF11-208ENST00000546534 COPS8Q99627 209 aa12.22□□□□□ -0.45
SCAF11-208ENST00000546534 PACSIN1Q9BY11 444 aa12.22□□□□□ -0.45
SCAF11-208ENST00000546534 ZNF160Q9HCG1 818 aa12.22□□□□□ -0.45
SCAF11-208ENST00000546534 SEMA3GQ9NS98 782 aa12.22□□□□□ -0.45
SCAF11-208ENST00000546534 KLHL8Q9P2G9 620 aaPredicted RBP12.22□□□□□ -0.45
SCAF11-208ENST00000546534 NENFQ9UMX5 172 aa12.22□□□□□ -0.45
SCAF11-208ENST00000546534 KLHL20Q9Y2M5 609 aa12.22□□□□□ -0.45
SCAF11-208ENST00000546534 AKAP9Q99996 3911 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 TRAV17A0A0B4J275 112 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 DYTNA2CJ06 578 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 ISM1B1AKI9 464 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 CAPN3P20807 821 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 MCM3P25205 808 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 PEBP1P30086 187 aaKnown RBP12.21□□□□□ -0.45
SCAF11-208ENST00000546534 KIR3DL1P43629 444 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 ADORA2A-AS1P86434 159 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 CDSNQ15517 529 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 INAQ16352 499 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.21□□□□□ -0.45
SCAF11-208ENST00000546534 MICALCLQ6ZW33 695 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 MCATQ8IVS2 390 aaKnown RBP12.21□□□□□ -0.45
SCAF11-208ENST00000546534 OR13C4Q8NGS5 318 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 HEXDCQ8WVB3 486 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 PSMF1Q92530 271 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 VPS50Q96JG6 964 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 FSD1LQ9BXM9 530 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 OR6C2Q9NZP2 312 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 SEC14L3Q9UDX4 400 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 LCMT1Q9UIC8 334 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 NXT1Q9UKK6 140 aaKnown RBP12.21□□□□□ -0.45
SCAF11-208ENST00000546534 ASF1AQ9Y294 204 aa12.21□□□□□ -0.45
SCAF11-208ENST00000546534 TDRKHQ9Y2W6 561 aaKnown RBP12.21□□□□□ -0.45
SCAF11-208ENST00000546534 TACC2O95359 2948 aa12.21□□□□□ -0.46
SCAF11-208ENST00000546534 DCHS2Q6V1P9 2916 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 IGLV3-16A0A075B6K0 115 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 C5orf60A6NFR6 353 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 CCL22O00626 93 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 DSCR3O14972 297 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 WISP2O76076 250 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 HPP00738 406 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 F10P00742 488 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 F12P00748 615 aaPredicted RBP12.2□□□□□ -0.46
SCAF11-208ENST00000546534 H2AFZP0C0S5 128 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 PECAM1P16284 738 aaPredicted RBP12.2□□□□□ -0.46
SCAF11-208ENST00000546534 ITGALP20701 1170 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 MAGP20916 626 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 SOX11P35716 441 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 OR1D4P47884 311 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 NR2C2P49116 596 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 CDKN1CP49918 316 aaPredicted RBP12.2□□□□□ -0.46
SCAF11-208ENST00000546534 FANCCQ00597 558 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 MFSD7Q6UXD7 560 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 H2AFVQ71UI9 128 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 BZW1Q7L1Q6 419 aaKnown RBP12.2□□□□□ -0.46
SCAF11-208ENST00000546534 KBTBD2Q8IY47 623 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 CLDN19Q8N6F1 224 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 METTL27Q8N6F8 245 aaPredicted RBP12.2□□□□□ -0.46
SCAF11-208ENST00000546534 CCDC110Q8TBZ0 833 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 DENND1AQ8TEH3 1009 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 CTNNBL1Q8WYA6 563 aaPredicted RBP12.2□□□□□ -0.46
SCAF11-208ENST00000546534 HAS2Q92819 552 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 MTFMTQ96DP5 389 aaKnown RBP12.2□□□□□ -0.46
SCAF11-208ENST00000546534 CRB3Q9BUF7 120 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 FICDQ9BVA6 458 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 VPS37BQ9H9H4 285 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 CUTCQ9NTM9 273 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 ZDHHC3Q9NYG2 299 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 ABI3Q9P2A4 366 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 PTGFRNQ9P2B2 879 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 PLAGL1Q9UM63 463 aa12.2□□□□□ -0.46
SCAF11-208ENST00000546534 VSTM2BA6NLU5 285 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 USP1O94782 785 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 CRYABP02511 175 aaKnown RBP12.19□□□□□ -0.46
SCAF11-208ENST00000546534 ACPPP15309 386 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 ACADLP28330 430 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 OLIG2Q13516 323 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 KIR2DS3Q14952 304 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 NR1I3Q14994 352 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 RANBP10Q6VN20 620 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 SNX20Q7Z614 316 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 PRSS58Q8IYP2 241 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 TBC1D21Q8IYX1 336 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 DTWD1Q8N5C7 304 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 C8orf44Q96CB5 159 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 C14orf79Q96F83 325 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 VAT1Q99536 393 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 APOL2Q9BQE5 337 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 GORASP1Q9BQQ3 440 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.19□□□□□ -0.46
SCAF11-208ENST00000546534 POLG2Q9UHN1 485 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 RSPH14Q9UHP6 348 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 MAU2Q9Y6X3 613 aa12.19□□□□□ -0.46
SCAF11-208ENST00000546534 TRBV5-4A0A0C4DH59 114 aa12.18□□□□□ -0.46
SCAF11-208ENST00000546534 MAP2K7O14733 419 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms