RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 CEP44Q9C0F1 390 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 A0A1W2PPW3 197 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 SOCS2O14508 198 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 MYL12BO14950 172 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 TEX28O15482 410 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 FGBP02675 491 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 ATP1B2P14415 290 aaPredicted RBP15.31■□□□□ 0.04
CUX1-211ENST00000546411 EMX2Q04743 252 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 TEAD2Q15562 447 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 SF1Q15637 639 aaKnown RBP15.31■□□□□ 0.04
CUX1-211ENST00000546411 MEP1AQ16819 746 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 SYT16Q17RD7 645 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 RFTN2Q52LD8 501 aaPredicted RBP15.31■□□□□ 0.04
CUX1-211ENST00000546411 ARMC4Q5T2S8 1044 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 KIAA1324Q6UXG2 1013 aaKnown RBP15.31■□□□□ 0.04
CUX1-211ENST00000546411 TMEM173Q86WV6 379 aaPredicted RBP15.31■□□□□ 0.04
CUX1-211ENST00000546411 ABHD8Q96I13 439 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 HTATIP2Q9BUP3 242 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 CD244Q9BZW8 370 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 RNF38Q9H0F5 515 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 OR51B5Q9H339 312 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 FARSBQ9NSD9 589 aaKnown RBP15.31■□□□□ 0.04
CUX1-211ENST00000546411 COQ6Q9Y2Z9 468 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 COL4A5P29400 1685 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 RFPL2O75678 378 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 MED26O95402 600 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 ASLP04424 464 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 CDH1P12830 882 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 ARL4DP49703 201 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 SEPHS1P49903 392 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 GANABQ14697 944 aaKnown RBP15.31■□□□□ 0.04
CUX1-211ENST00000546411 CYP27C1Q4G0S4 372 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 LETMD1Q6P1Q0 360 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 BLOC1S3Q6QNY0 202 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 ADGRG6Q86SQ4 1221 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 GATAD2AQ86YP4 633 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 MMAAQ8IVH4 418 aaKnown RBP15.31■□□□□ 0.04
CUX1-211ENST00000546411 OR4K1Q8NGD4 311 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 LRCH3Q96II8 777 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 ZNF382Q96SR6 550 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 TDP1Q9NUW8 608 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 COL24A1Q17RW2 1714 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 LEFTY2O00292 366 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 SLC31A1O15431 190 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 FGF18O76093 207 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 FUT4P22083 530 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 ELK4P28324 431 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 NOS3P29474 1203 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 NTSP30990 170 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 ARRB2P32121 409 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 CREMQ03060 361 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 GTDC1Q4AE62 458 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 ATP13A5Q4VNC0 1218 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 R3HCC1LQ7Z5L2 792 aaKnown RBP15.3■□□□□ 0.04
CUX1-211ENST00000546411 CCDC177Q9NQR7 707 aaPredicted RBP15.3■□□□□ 0.04
CUX1-211ENST00000546411 RAD18Q9NS91 495 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 J3QRK9 145 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 ETV3P41162 512 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 SLBPQ14493 270 aaKnown RBP eCLIP15.3■□□□□ 0.04
CUX1-211ENST00000546411 FAM219BQ5XKK7 198 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 GRASPQ7Z6J2 395 aaPredicted RBP15.3■□□□□ 0.04
CUX1-211ENST00000546411 PGBD5Q8N414 524 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 FBXL8Q96CD0 374 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 RANBP9Q96S59 729 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 TMEM175Q9BSA9 504 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 PCDH10Q9P2E7 1040 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 RUVBL1Q9Y265 456 aaKnown RBP15.3■□□□□ 0.04
CUX1-211ENST00000546411 PCDH7O60245 1069 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 KRT75O95678 551 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 CD70P32970 193 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 MAPK12P53778 367 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 INAQ16352 499 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 OGFRL1Q5TC84 451 aaPredicted RBP15.3■□□□□ 0.04
CUX1-211ENST00000546411 PTCHD4Q6ZW05 846 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 FAM110BQ8TC76 370 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 PAWRQ96IZ0 340 aaKnown RBP15.3■□□□□ 0.04
CUX1-211ENST00000546411 C11orf84Q9BUA3 381 aaPredicted RBP15.3■□□□□ 0.04
CUX1-211ENST00000546411 AIG1Q9NVV5 245 aa15.3■□□□□ 0.04
CUX1-211ENST00000546411 KPNA4O00629 521 aaPredicted RBP15.29■□□□□ 0.04
CUX1-211ENST00000546411 CREG1O75629 220 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 HMGCLP35914 325 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 CENPAP49450 140 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 CDK9P50750 372 aaKnown RBP15.29■□□□□ 0.04
CUX1-211ENST00000546411 CCR3P51677 355 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 NUDT6P53370 316 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 SEMA3AQ14563 771 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 CES5AQ6NT32 575 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 ARMC8Q8IUR7 673 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 POC5Q8NA72 575 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 SMYD1Q8NB12 490 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 SEC14L3Q9UDX4 400 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 PCTPQ9UKL6 214 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 OR1F1O43749 312 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 ERN1O75460 977 aaKnown RBP15.29■□□□□ 0.04
CUX1-211ENST00000546411 CXCR2P25025 360 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 ASMTP46597 345 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 CDKL1Q00532 357 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 C9orf64Q5T6V5 341 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 TOP1MTQ969P6 601 aa15.29■□□□□ 0.04
CUX1-211ENST00000546411 QRFPRQ96P65 431 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms