RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 ZBTB2Q8N680 514 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 OTUD6BQ8N6M0 293 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 ZNF655Q8N720 491 aaPredicted RBP12.64□□□□□ -0.39
RTN3-212ENST00000543123 CLEC18CQ8NCF0 446 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 FDCSPQ8NFU4 85 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 OR2Y1Q8NGV0 311 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 CFAP61Q8NHU2 1237 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 FLVCR1-AS1Q8TAF5 88 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 ZNF778Q96MU6 729 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 FOPNLQ96NB1 174 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 GBP5Q96PP8 586 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 SLC29A3Q9BZD2 475 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 SLAMF7Q9NQ25 335 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 HOMER3Q9NSC5 361 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.64□□□□□ -0.39
RTN3-212ENST00000543123 C5AR2Q9P296 337 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 PLAGL1Q9UM63 463 aa12.64□□□□□ -0.39
RTN3-212ENST00000543123 PTRH2Q9Y3E5 179 aaKnown RBP12.64□□□□□ -0.39
RTN3-212ENST00000543123 SEC16AO15027 2179 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 A6NL46 340 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 H3BMH7 237 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 RASGRF2O14827 1237 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 KLF7O75840 302 aaPredicted RBP12.63□□□□□ -0.39
RTN3-212ENST00000543123 IPO13O94829 963 aaKnown RBP12.63□□□□□ -0.39
RTN3-212ENST00000543123 SLCO2B1O94956 709 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 CCDC175P0C221 793 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 CBSLP0DN79 551 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 MAGP20916 626 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 RPL22P35268 128 aaKnown RBP12.63□□□□□ -0.39
RTN3-212ENST00000543123 CBSP35520 551 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 CCNFP41002 786 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 GABRA4P48169 554 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 NPY2RP49146 381 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 SESN2P58004 480 aaPredicted RBP12.63□□□□□ -0.39
RTN3-212ENST00000543123 CDK16Q00536 496 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 NAA25Q14CX7 972 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 CYP2A13Q16696 494 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 TCTE1Q5JU00 501 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 ARMC3Q5W041 872 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 MRNIPQ6NTE8 343 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 OTOAQ7RTW8 1153 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 SDCCAG8Q86SQ7 713 aaPredicted RBP12.63□□□□□ -0.39
RTN3-212ENST00000543123 DNAJC22Q8N4W6 341 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 OR2L8Q8NGY9 312 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 MAGEC3Q8TD91 643 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 SKA2Q8WVK7 121 aaPredicted RBP12.63□□□□□ -0.39
RTN3-212ENST00000543123 TM9SF4Q92544 642 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 FKBP10Q96AY3 582 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 RAD51AP1Q96B01 352 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 NACC2Q96BF6 587 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 SPRTNQ9H040 489 aaPredicted RBP12.63□□□□□ -0.39
RTN3-212ENST00000543123 CHRAC1Q9NRG0 131 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 EURLQ9NYK6 297 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 CDYLQ9Y232 598 aa12.63□□□□□ -0.39
RTN3-212ENST00000543123 DRG1Q9Y295 367 aaKnown RBP12.63□□□□□ -0.39
RTN3-212ENST00000543123 USP9YO00507 2555 aaPredicted RBP12.62□□□□□ -0.39
RTN3-212ENST00000543123 USP9XQ93008 2570 aaPredicted RBP12.62□□□□□ -0.39
RTN3-212ENST00000543123 A0A1B0GX78 115 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 H3BMM5 538 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 NRDCO43847 1150 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 SORBS2O94875 1100 aaKnown RBP12.62□□□□□ -0.39
RTN3-212ENST00000543123 TPBGLP0DKB5 382 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 ETS1P14921 441 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 RPS3P23396 243 aaKnown RBP eCLIP12.62□□□□□ -0.395e-10■■■■□ 23
RTN3-212ENST00000543123 PEBP1P30086 187 aaKnown RBP12.62□□□□□ -0.39
RTN3-212ENST00000543123 SARNPP82979 210 aaKnown RBP12.62□□□□□ -0.39
RTN3-212ENST00000543123 SRSF1Q07955 248 aaKnown RBP eCLIP12.62□□□□□ -0.392e-7■■□□□ 13.4
RTN3-212ENST00000543123 SEMA3AQ14563 771 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 SF1Q15637 639 aaKnown RBP12.62□□□□□ -0.39
RTN3-212ENST00000543123 NADK2Q4G0N4 442 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 FAM69BQ5VUD6 431 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 JMJD6Q6NYC1 403 aaPredicted RBP12.62□□□□□ -0.39
RTN3-212ENST00000543123 VRK3Q8IV63 474 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 TRIM58Q8NG06 486 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 PNPLA2Q96AD5 504 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 PTERQ96BW5 349 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 VPS50Q96JG6 964 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 SMAD5Q99717 465 aaKnown RBP12.62□□□□□ -0.39
RTN3-212ENST00000543123 NUDT9Q9BW91 350 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 MRM3Q9HC36 420 aaKnown RBP12.62□□□□□ -0.39
RTN3-212ENST00000543123 TREX1Q9NSU2 369 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 DHCR7Q9UBM7 475 aaKnown RBP12.62□□□□□ -0.39
RTN3-212ENST00000543123 VPS9D1Q9Y2B5 631 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 FAM169AQ9Y6X4 670 aa12.62□□□□□ -0.39
RTN3-212ENST00000543123 IQCF5A8MTL0 148 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 TARM1B6A8C7 271 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 FGGP02679 453 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 ZSCAN5DPP0CG00 497 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 GP1BBP13224 206 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 PAMP19021 973 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 TPSB2P20231 275 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 ALAS2P22557 587 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 GRM7Q14831 915 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 MYBPC3Q14896 1274 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 TPSAB1Q15661 275 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 DCAF10Q5QP82 559 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 FHL5Q5TD97 284 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 MRPL14Q6P1L8 145 aaKnown RBP12.61□□□□□ -0.39
RTN3-212ENST00000543123 ZNF662Q6ZS27 426 aa12.61□□□□□ -0.39
RTN3-212ENST00000543123 PRUNE1Q86TP1 453 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms