RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 HOXA2O43364 376 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 GSK3BP49841 420 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 APLP1P51693 650 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 RPS6KA2Q15349 733 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 TSTD2Q5T7W7 516 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 GLYATQ6IB77 296 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 SYCE2Q6PIF2 218 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 ARRDC2Q8TBH0 407 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 ISL2Q96A47 359 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 ROPN1LQ96C74 230 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 SMIM14Q96QK8 99 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 VN1R3Q9BXE9 311 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 ARL5AQ9Y689 179 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 FRMPD3Q5JV73 1810 aa13.68□□□□□ -0.22
LIG1-203ENST00000536218 COCHO43405 550 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 DNTTP04053 509 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 ALPLP05186 524 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 SLC6A2P23975 617 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 CBX2Q14781 532 aaPredicted RBP13.67□□□□□ -0.22
LIG1-203ENST00000536218 SYT16Q17RD7 645 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 ZNF517Q6ZMY9 492 aaPredicted RBP13.67□□□□□ -0.22
LIG1-203ENST00000536218 EFL1Q7Z2Z2 1120 aaKnown RBP13.67□□□□□ -0.22
LIG1-203ENST00000536218 NRARPQ7Z6K4 114 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 AMIGO1Q86WK6 493 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 ZDHHC13Q8IUH4 622 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 LSM14AQ8ND56 463 aaKnown RBP13.67□□□□□ -0.22
LIG1-203ENST00000536218 TBATAQ96M53 351 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 ZNF300Q96RE9 604 aaPredicted RBP13.67□□□□□ -0.22
LIG1-203ENST00000536218 CYP2S1Q96SQ9 504 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 MCMBPQ9BTE3 642 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 TNKS2Q9H2K2 1166 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 ALG2Q9H553 416 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 DRGXA6NNA5 263 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 ACSL4O60488 711 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 OR7A10O76100 309 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 GNRH1P01148 92 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 PSKH1P11801 424 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 CD36P16671 472 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 GGT5P36269 586 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 SGSHP51688 502 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 CTAG1AP78358 180 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 DAB2P98082 770 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 LIPEQ05469 1076 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 KCNAB2Q13303 367 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 TRIM60Q495X7 471 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 ADAMTSL2Q86TH1 951 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 WBP2Q969T9 261 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 TMEM74Q96NL1 305 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 HOPXQ9BPY8 73 aaPredicted RBP13.67□□□□□ -0.22
LIG1-203ENST00000536218 C1QTNF1Q9BXJ1 281 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 POLR3BQ9NW08 1133 aaPredicted RBP13.67□□□□□ -0.22
LIG1-203ENST00000536218 INTS6Q9UL03 887 aaKnown RBP13.67□□□□□ -0.22
LIG1-203ENST00000536218 NDUFAF1Q9Y375 327 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 HCN4Q9Y3Q4 1203 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 C2orf78A6NCI8 922 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 CBX4O00257 560 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 GNGT2O14610 69 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 MED26O95402 600 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 KLKB1P03952 638 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 IL10RBQ08334 325 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 FAM83EQ2M2I3 478 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 HECTD3Q5T447 861 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 KIAA0930Q6ICG6 404 aaPredicted RBP13.67□□□□□ -0.22
LIG1-203ENST00000536218 KLHDC8BQ8IXV7 354 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 TMEM151AQ8N4L1 468 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 TXNDC5Q8NBS9 432 aaKnown RBP13.67□□□□□ -0.22
LIG1-203ENST00000536218 STYXQ8WUJ0 223 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 PHF21BQ96EK2 531 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 ROGDIQ9GZN7 287 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 POLR1EQ9GZS1 481 aaKnown RBP13.67□□□□□ -0.22
LIG1-203ENST00000536218 ERVK13-1Q9NX77 482 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 MARCH4Q9P2E8 410 aaPredicted RBP13.67□□□□□ -0.22
LIG1-203ENST00000536218 NUFIP1Q9UHK0 495 aaKnown RBP13.67□□□□□ -0.22
LIG1-203ENST00000536218 INVSQ9Y283 1065 aa13.67□□□□□ -0.22
LIG1-203ENST00000536218 ZNF840PA6NDX5 716 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 IGLV3-27P01718 113 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 CAPN3P20807 821 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 CORO1AP31146 461 aaKnown RBP13.66□□□□□ -0.22
LIG1-203ENST00000536218 SLC11A2P49281 568 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 SNTA1Q13424 505 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 LAPTM5Q13571 262 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 NFYCQ13952 458 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 CLCA4Q14CN2 919 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 PARP15Q460N3 678 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.66□□□□□ -0.22
LIG1-203ENST00000536218 DPY19L3Q6ZPD9 716 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 RYBPQ8N488 228 aaPredicted RBP13.66□□□□□ -0.22
LIG1-203ENST00000536218 C2CD4AQ8NCU7 369 aaPredicted RBP13.66□□□□□ -0.22
LIG1-203ENST00000536218 OR13C4Q8NGS5 318 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 HEXDCQ8WVB3 486 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 STON2Q8WXE9 905 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 FERD3LQ96RJ6 166 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 UCK2Q9BZX2 261 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 AMBRA1Q9C0C7 1298 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 PABPN1LA6NDY0 278 aaKnown RBP13.66□□□□□ -0.22
LIG1-203ENST00000536218 OR6C70A6NIJ9 312 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 ARHGEF9O43307 516 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 HS6ST1O60243 411 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 CYP7B1O75881 506 aa13.66□□□□□ -0.22
LIG1-203ENST00000536218 HSD17B1P14061 328 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms