RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 RANBP9Q96S59 729 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 TTC1Q99614 292 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 NDC1Q9BTX1 674 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 ZNF552Q9H707 407 aaPredicted RBP10.92□□□□□ -0.66
VPS28-214ENST00000531032 CASS4Q9NQ75 786 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 ENAMQ9NRM1 1142 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 SLC22A11Q9NSA0 550 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 EURLQ9NYK6 297 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 MAP10Q9P2G4 905 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 IMPACTQ9P2X3 320 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 SLC2A6Q9UGQ3 507 aa10.92□□□□□ -0.66
VPS28-214ENST00000531032 NOTCH2Q04721 2471 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 WIPF3A6NGB9 483 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 AGPSO00116 658 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 KRT86O43790 486 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 GPC4O75487 556 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 CBX6O95503 412 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 DDAH2O95865 285 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 ONECUT2O95948 504 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 GAS8O95995 478 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 ITGAXP20702 1163 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 ADRA1DP25100 572 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 FDFT1P37268 417 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 FOXL2P58012 376 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 KIF5AQ12840 1032 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 GRB7Q14451 532 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 SEMA3AQ14563 771 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 SLC9A5Q14940 896 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 OASLQ15646 514 aaKnown RBP10.91□□□□□ -0.66
VPS28-214ENST00000531032 CRB2Q5IJ48 1285 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 TMEM139Q8IV31 216 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 VRK3Q8IV63 474 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 TMEM151BQ8IW70 566 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 DCUN1D3Q8IWE4 304 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 FAM20CQ8IXL6 584 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 OR4L1Q8NH43 312 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 PRR7Q8TB68 274 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 LKAAEAR1Q8TD35 194 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 ASZ1Q8WWH4 475 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 ATG4AQ8WYN0 398 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 DLG3Q92796 817 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 PEX13Q92968 403 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 FKBP10Q96AY3 582 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 ZNF778Q96MU6 729 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 BARD1Q99728 777 aaKnown RBP10.91□□□□□ -0.66
VPS28-214ENST00000531032 DESI2Q9BSY9 194 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 TSSK1BQ9BXA7 367 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 ETNK1Q9HBU6 452 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 ASF1BQ9NVP2 202 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 IRAK4Q9NWZ3 460 aa10.91□□□□□ -0.66
VPS28-214ENST00000531032 A0A0U1RQJ8 604 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 A0A1B0GX78 115 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 IQCF5A8MTL0 148 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 MASP2O00187 686 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 LIASO43766 372 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 SLCO2B1O94956 709 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 S1PR4O95977 384 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 RPN2P04844 631 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 CD9P21926 228 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 MMP11P24347 488 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 PPARGP37231 505 aaPredicted RBP10.9□□□□□ -0.66
VPS28-214ENST00000531032 GRIA1P42261 906 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 ARSFP54793 590 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 CSE1LP55060 971 aaKnown RBP10.9□□□□□ -0.66
VPS28-214ENST00000531032 HSPA14Q0VDF9 509 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 AIMP2Q13155 320 aaKnown RBP10.9□□□□□ -0.66
VPS28-214ENST00000531032 NR6A1Q15406 480 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 CYP2A13Q16696 494 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 FASTKD1Q53R41 847 aaKnown RBP10.9□□□□□ -0.66
VPS28-214ENST00000531032 UNC5DQ6UXZ4 953 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 PPP1R21Q6ZMI0 780 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 Q6ZS92 163 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 NLRP9Q7RTR0 991 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 MCATQ8IVS2 390 aaKnown RBP10.9□□□□□ -0.66
VPS28-214ENST00000531032 CISD2Q8N5K1 135 aaKnown RBP10.9□□□□□ -0.66
VPS28-214ENST00000531032 OR2L8Q8NGY9 312 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 DENND1AQ8TEH3 1009 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 TM9SF4Q92544 642 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 INPP5DQ92835 1189 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 SLC22A18Q96BI1 424 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 CARD6Q9BX69 1037 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 FRMD8P1Q9BZ68 369 aaPredicted RBP10.9□□□□□ -0.66
VPS28-214ENST00000531032 ILKAPQ9H0C8 392 aaPredicted RBP10.9□□□□□ -0.66
VPS28-214ENST00000531032 SLC26A1Q9H2B4 701 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 WDR54Q9H977 334 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 ATP13A2Q9NQ11 1180 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 KLHL20Q9Y2M5 609 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 TCAF1Q9Y4C2 921 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 PCDHGA10Q9Y5H3 936 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 CAPN6Q9Y6Q1 641 aa10.9□□□□□ -0.66
VPS28-214ENST00000531032 E7EVH7 732 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 RASGRF2O14827 1237 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 FKBP9O95302 570 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 LDLRP01130 860 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 ALBP02768 609 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 APOA4P06727 396 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 ATXN8OSP0DMR3 200 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 ALAS2P22557 587 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 AOAHP28039 575 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 PRAMEP78395 509 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms