RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	LATS2	Q9NRM7	1088 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	IARS2	Q9NSE4	1012 aa	Known RBP	12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	INTS10	Q9NVR2	710 aa	Known RBP	12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	MED16	Q9Y2X0	877 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	PCSK5	Q92824	1860 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	MAGEB16	A2A368	324 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	CDC14C	A4D256	554 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843		E5RI56	91 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843		H3BMM5	538 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	RASGRF2	O14827	1237 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	KPNA5	O15131	536 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	PFDN6	O15212	129 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	MT-ND3	P03897	115 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	RPN2	P04844	631 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	ERVK-10	P10266	1014 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	CLCN7	P51798	805 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	ITGA1	P56199	1179 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	POLE2	P56282	527 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	GBX1	Q14549	363 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	CRYM	Q14894	314 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	KIR2DS3	Q14952	304 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	KLHL38	Q2WGJ6	581 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	HSP90AA5P	Q58FG0	334 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	OR2L8	Q8NGY9	312 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	OR8K5	Q8NH50	307 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	DENND1A	Q8TEH3	1009 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	N4BP2L2	Q92802	583 aa	Predicted RBP	12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	ACTR5	Q9H9F9	607 aa	Predicted RBP	12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	FBXO5	Q9UKT4	447 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	SLC39A10	Q9ULF5	831 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	PCDHB3	Q9Y5E6	796 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	MED13	Q9UHV7	2174 aa		12.81	□□□□□ -0.36
RNF4-215	ENST00000511843	ARHGEF33	A8MVX0	844 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	PYCARD-AS1	I3L0S3	204 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	MEN1	O00255	615 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	MAP3K7	O43318	606 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	ZNF749	O43361	778 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	KDM1A	O60341	852 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	NRP2	O60462	931 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	CREG1	O75629	220 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	HAUS5	O94927	633 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	PGAM1	P18669	254 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	RORA	P35398	523 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	GRIA3	P42263	894 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	ADAR	P55265	1226 aa	Known RBP	12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	YBX1	P67809	324 aa	Known RBP	12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	IL10RA	Q13651	578 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	FASTK	Q14296	549 aa	Known RBP	12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	SLC5A12	Q1EHB4	618 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	C1orf189	Q5VU69	101 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	ARMC3	Q5W041	872 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	KCNMB4	Q86W47	210 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	SYTL1	Q8IYJ3	562 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	DSEL	Q8IZU8	1212 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	CFAP36	Q96G28	342 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	TCTN2	Q96GX1	697 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	NDN	Q99608	321 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	MIPEP	Q99797	713 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	WDR83	Q9BRX9	315 aa	Known RBP	12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	SLC7A5P2	Q9GIP4	190 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	PLAC1	Q9HBJ0	212 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	PCMTD2	Q9NV79	361 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	SERTAD3	Q9UJW9	196 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	CHMP2B	Q9UQN3	213 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	FAM169A	Q9Y6X4	670 aa		12.8	□□□□□ -0.36
RNF4-215	ENST00000511843	FASN	P49327	2511 aa	Known RBP	12.8	□□□□□ -0.36
RNF4-215	ENST00000511843		E7EQ34	232 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843		H3BMH7	237 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	PRICKLE3	O43900	615 aa	Predicted RBP	12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	OR2B3	O76000	313 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	MATN4	O95460	622 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	MSL3P1	P0C860	447 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	PTPN4	P29074	926 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	ELK3	P41970	407 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	CCR10	P46092	362 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	PGGT1B	P53609	377 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	ITGA8	P53708	1063 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	MC1R	Q01726	317 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	SLC9A5	Q14940	896 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	SF1	Q15637	639 aa	Known RBP	12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	FCRL6	Q6DN72	434 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	TTC23L	Q6PF05	361 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	FAM198B	Q6UWH4	519 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	ZNF517	Q6ZMY9	492 aa	Predicted RBP	12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	CPNE9	Q8IYJ1	553 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	DNAJC22	Q8N4W6	341 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	ZNF655	Q8N720	491 aa	Predicted RBP	12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	RAD51AP1	Q96B01	352 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	FOPNL	Q96NB1	174 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	CATSPER2	Q96P56	530 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	KRT12	Q99456	494 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	GPR21	Q99679	349 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	EBNA1BP2	Q99848	306 aa	Known RBP	12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	FAM167B	Q9BTA0	163 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	CCDC68	Q9H2F9	335 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	IRAK4	Q9NWZ3	460 aa		12.79	□□□□□ -0.36
RNF4-215	ENST00000511843	DHCR7	Q9UBM7	475 aa	Known RBP	12.79	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 25 ms