RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 CHRM3P20309 590 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 RPS3P23396 243 aaKnown RBP eCLIP11.52□□□□□ -0.571e-6■■■■□ 22.9
MED28-203ENST00000503945 MGAT1P26572 445 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 FMO4P31512 558 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 TERF1P54274 439 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 RRADP55042 308 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 GPS1Q13098 491 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 SSPNQ14714 243 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 TPSAB1Q15661 275 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 ZIC1Q15915 447 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 PTCHD3Q3KNS1 767 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 ARMC3Q5W041 872 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 HIST2H2BCQ6DN03 193 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 RHBDD2Q6NTF9 364 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 CES3Q6UWW8 571 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 MED25Q71SY5 747 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 MCATQ8IVS2 390 aaKnown RBP11.52□□□□□ -0.57
MED28-203ENST00000503945 DCUN1D3Q8IWE4 304 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 C2orf73Q8N5S3 287 aaPredicted RBP11.52□□□□□ -0.57
MED28-203ENST00000503945 ZNF655Q8N720 491 aaPredicted RBP11.52□□□□□ -0.57
MED28-203ENST00000503945 PRELID2Q8N945 189 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 TMEM102Q8N9M5 508 aaPredicted RBP11.52□□□□□ -0.57
MED28-203ENST00000503945 FLVCR1-AS1Q8TAF5 88 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 MAGOHBQ96A72 148 aaKnown RBP11.52□□□□□ -0.57
MED28-203ENST00000503945 ZUFSPQ96AP4 578 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 MFSD3Q96ES6 412 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 PBKQ96KB5 322 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 NAP1L3Q99457 506 aaPredicted RBP11.52□□□□□ -0.57
MED28-203ENST00000503945 NDC1Q9BTX1 674 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 TRIM55Q9BYV6 548 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 P2RY12Q9H244 342 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 MRM3Q9HC36 420 aaKnown RBP11.52□□□□□ -0.57
MED28-203ENST00000503945 TXLNGQ9NUQ3 528 aa11.52□□□□□ -0.57
MED28-203ENST00000503945 USP9XQ93008 2570 aaPredicted RBP11.52□□□□□ -0.57
MED28-203ENST00000503945 H3BMM5 538 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 ZSCAN9O15535 394 aaPredicted RBP11.51□□□□□ -0.57
MED28-203ENST00000503945 AVILO75366 819 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 S1PR4O95977 384 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 KRT14P02533 472 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 CAPN1P07384 714 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 CBSLP0DN79 551 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 CBSP35520 551 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 CCNFP41002 786 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 PGDP52209 483 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 ARSFP54793 590 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 EIF3BP55884 814 aaKnown RBP11.51□□□□□ -0.57
MED28-203ENST00000503945 IL10RAQ13651 578 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 NCF4Q15080 339 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 ZC3H12BQ5HYM0 836 aaKnown RBP11.51□□□□□ -0.57
MED28-203ENST00000503945 RNF187Q5TA31 235 aaPredicted RBP11.51□□□□□ -0.57
MED28-203ENST00000503945 C1orf189Q5VU69 101 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 NEPROQ6NW34 567 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 CASC4Q6P4E1 433 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 OR2L8Q8NGY9 312 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 PROKR1Q8TCW9 393 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 ADAMTS17Q8TE56 1095 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 PTERQ96BW5 349 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 IP6K3Q96PC2 410 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 RAB11FIP5Q9BXF6 653 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 LRRC4CQ9HCJ2 640 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 SYBUQ9NX95 663 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 EURLQ9NYK6 297 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 SAMD15Q9P1V8 674 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 IFT80Q9P2H3 777 aaPredicted RBP11.51□□□□□ -0.57
MED28-203ENST00000503945 NDOR1Q9UHB4 597 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 SOX13Q9UN79 622 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 SRPK3Q9UPE1 567 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 VPS9D1Q9Y2B5 631 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 PCDHGA9Q9Y5G4 932 aaKnown RBP11.51□□□□□ -0.57
MED28-203ENST00000503945 TEX15Q9BXT5 2789 aa11.51□□□□□ -0.57
MED28-203ENST00000503945 SPENQ96T58 3664 aaKnown RBP11.5□□□□□ -0.57
MED28-203ENST00000503945 CACNA1DQ01668 2161 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.5□□□□□ -0.57
MED28-203ENST00000503945 TCRBV7S3A2A0A539 114 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 A6NL46 340 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 TTLL8A6PVC2 850 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 TARM1B6A8C7 271 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 GOLGA8KD6RF30 607 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 GOLGA8TH3BQL2 631 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 PEX12O00623 359 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 RASGRF2O14827 1237 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 ZNF185O15231 689 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 HCRTR1O43613 425 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 FKBP9O95302 570 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 C1orf105O95561 183 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 IGHEP01854 428 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 ESR1P03372 595 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 PDGFAP04085 211 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 PIM1P11309 404 aaPredicted RBP11.5□□□□□ -0.57
MED28-203ENST00000503945 PKLRP30613 574 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 GRIA3P42263 894 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 PTGIRP43119 386 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 UQCRFS1P47985 274 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 GABRA4P48169 554 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 VPS41P49754 854 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 CCZ1BP86790 482 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 CCZ1P86791 482 aaPredicted RBP11.5□□□□□ -0.57
MED28-203ENST00000503945 DEFB110Q30KQ9 67 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 FAM214AQ32MH5 1076 aa11.5□□□□□ -0.57
MED28-203ENST00000503945 FIGLAQ6QHK4 219 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms