RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ABHD14A-ACY1A0A1B0GW23 586 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 K7EPI3 171 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ULK1O75385 1050 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SCELO95171 688 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 HTR1AP08908 422 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ZNF182P17025 639 aaPredicted RBP15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ACRV1P26436 265 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GZMMP51124 257 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PON2Q15165 354 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CTU2Q2VPK5 515 aaKnown RBP15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 TTC23Q5W5X9 447 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GTF2IRD2BQ6EKJ0 949 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 MBOAT1Q6ZNC8 495 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 GTF2IRD2Q86UP8 949 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 ZC3H7AQ8IWR0 971 aaKnown RBP15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 SPARTQ8N0X7 666 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CHDHQ8NE62 594 aaPredicted RBP15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 HDAC2Q92769 488 aaKnown RBP15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 CSF3RQ99062 836 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 PAIP1Q9H074 479 aaKnown RBP15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 INIPQ9NRY2 104 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 FAIMQ9NVQ4 179 aa15.71■□□□□ 0.11
MSH5-SAPCD1-208ENST00000498473 HTR3EA5X5Y0 456 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SMAD6O43541 496 aaKnown RBP15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SEC22BO75396 215 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CLDN7O95471 211 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 EBLN1P0CF75 366 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 BPIP17213 487 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GKP32189 559 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 NRIP1P48552 1158 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 AP1S1P61966 158 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PPP1R8Q12972 351 aaKnown RBP15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PLD1Q13393 1074 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SKIV2LQ15477 1246 aaKnown RBP15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 MEP1AQ16819 746 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ZNF829Q3KNS6 432 aaPredicted RBP15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 C6orf141Q5SZD1 244 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 FKBP9P1Q75LS8 142 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GPR149Q86SP6 731 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 RBM23Q86U06 439 aaKnown RBP15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CALHM3Q86XJ0 350 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 MICU2Q8IYU8 434 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TNKS2Q9H2K2 1166 aa15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 KAT8Q9H7Z6 458 aaKnown RBP15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 DCAF13Q9NV06 445 aaKnown RBP15.71■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 KIAA1671Q9BY89 1806 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 C1orf232A0A0U1RR37 186 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GFRA2O00451 464 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GREM1O60565 184 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PARNO95453 639 aaKnown RBP15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TRBC1P01850 177 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 BCKDHAP12694 445 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 EPORP19235 508 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CCNA2P20248 432 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 FUT4P22083 530 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GSTM2P28161 218 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 HNF1BP35680 557 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 KCNAB2Q13303 367 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TUBA3CQ13748 450 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CHRNA6Q15825 494 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CACHD1Q5VU97 1274 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 MACC1Q6ZN28 852 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SVOPLQ8N434 492 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CLHC1Q8NHS4 586 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ADAMTS19Q8TE59 1207 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 FAM162AQ96A26 154 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 OR52E6Q96RD3 313 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ADNPQ9H2P0 1102 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 RDH14Q9HBH5 336 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SERHLQ9NQF3 203 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 INVSQ9Y283 1065 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PCDHB14Q9Y5E9 798 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CREG1O75629 220 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 HOXB9P17482 250 aaPredicted RBP15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ITGALP20701 1170 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CD47Q08722 323 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CHPFQ8IZ52 775 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 APCDD1Q8J025 514 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 BPIFB6Q8NFQ5 453 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 NETO1Q8TDF5 533 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 BORCS5Q969J3 196 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 MTFMTQ96DP5 389 aaKnown RBP15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SLC22A12Q96S37 553 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SH3GL1Q99961 368 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CLSTN3Q9BQT9 956 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 CPPED1Q9BRF8 314 aaPredicted RBP15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 C1orf109Q9NX04 203 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 AFF4Q9UHB7 1163 aaKnown RBP15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 BACE2Q9Y5Z0 518 aa15.7■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 PLXNB3Q9ULL4 1909 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 RETP07949 1114 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 TFPTP0C1Z6 253 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 DCTP40126 519 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ZXDBP98169 803 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SPIDRQ14159 915 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 MOGQ16653 247 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 IMPG1Q17R60 797 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 ATG9BQ674R7 924 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 SPESP1Q6UW49 350 aa15.69■□□□□ 0.1
MSH5-SAPCD1-208ENST00000498473 GCNT7Q6ZNI0 430 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms