RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	ACSS2	Q9NR19	701 aa		11.21	□□□□□ -0.61
VTI1A-208	ENST00000494728	EIF2B3	Q9NR50	452 aa	Known RBP	11.21	□□□□□ -0.61
VTI1A-208	ENST00000494728	ANKMY1	Q9P2S6	941 aa		11.21	□□□□□ -0.61
VTI1A-208	ENST00000494728	POLG2	Q9UHN1	485 aa		11.21	□□□□□ -0.61
VTI1A-208	ENST00000494728	TSR3	Q9UJK0	312 aa	Known RBP	11.21	□□□□□ -0.61
VTI1A-208	ENST00000494728	SERTAD3	Q9UJW9	196 aa		11.21	□□□□□ -0.61
VTI1A-208	ENST00000494728	CSMD1	Q96PZ7	3565 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728		A6NL46	340 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	PRMT5	O14744	637 aa	Predicted RBP	11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	ZNF185	O15231	689 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	CD3EAP	O15446	510 aa	Known RBP	11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	SLCO2B1	O94956	709 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	MED26	O95402	600 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	GAS8	O95995	478 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	FGG	P02679	453 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	UMOD	P07911	640 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	MCM3	P25205	808 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	MGAT1	P26572	445 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	OTX2	P32243	289 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	CXCR5	P32302	372 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	YBX1	P67809	324 aa	Known RBP	11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	BASP1	P80723	227 aa	Known RBP	11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	CCZ1B	P86790	482 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	CCZ1	P86791	482 aa	Predicted RBP	11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	KIR2DS3	Q14952	304 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	CCNG2	Q16589	344 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	DNAJC21	Q5F1R6	531 aa	Known RBP	11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	PCID2	Q5JVF3	399 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	LYPLAL1	Q5VWZ2	237 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	FCRL6	Q6DN72	434 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	DRICH1	Q6PGQ1	229 aa	Predicted RBP	11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	DCUN1D3	Q8IWE4	304 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	GPR135	Q8IZ08	494 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	MPP5	Q8N3R9	675 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	DENND1A	Q8TEH3	1009 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	PEX13	Q92968	403 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	FAM136A	Q96C01	138 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	MFSD3	Q96ES6	412 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	CARD6	Q9BX69	1037 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	SYNPO2L	Q9H987	977 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	IL1RAPL1	Q9NZN1	696 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	GALP	Q9UBC7	116 aa		11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	TTC7A	Q9ULT0	858 aa	Predicted RBP	11.2	□□□□□ -0.62
VTI1A-208	ENST00000494728	CPAMD8	Q8IZJ3	1885 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	POLE	Q07864	2286 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728		C9J4A7	227 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	PRICKLE3	O43900	615 aa	Predicted RBP	11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	NIPSNAP2	O75323	286 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	AVIL	O75366	819 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	RNF224	P0DH78	156 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	CD9	P21926	228 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	VPS41	P49754	854 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	EIF3B	P55884	814 aa	Known RBP	11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	PLOD1	Q02809	727 aa	Predicted RBP	11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	UBAP2L	Q14157	1087 aa	Known RBP	11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	KCNJ11	Q14654	390 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	TRIP13	Q15645	432 aa	Predicted RBP	11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	MLIP	Q5VWP3	458 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	ANKRD22	Q5VYY1	191 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	MRPL14	Q6P1L8	145 aa	Known RBP	11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	TTC27	Q6P3X3	843 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	UNC5D	Q6UXZ4	953 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	COX15	Q7KZN9	410 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	NLRP9	Q7RTR0	991 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	PPP1R32	Q7Z5V6	425 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	HOOK3	Q86VS8	718 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	RBMXL3	Q8N7X1	1067 aa	Known RBP	11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	PRELID2	Q8N945	189 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	OR2L8	Q8NGY9	312 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	ASZ1	Q8WWH4	475 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	LPGAT1	Q92604	370 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	BIRC8	Q96P09	236 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	DPH2	Q9BQC3	489 aa	Predicted RBP	11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	MESP1	Q9BRJ9	268 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	MFRP	Q9BY79	579 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	SLC7A5P2	Q9GIP4	190 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	EURL	Q9NYK6	297 aa		11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728	PTRH2	Q9Y3E5	179 aa	Known RBP	11.19	□□□□□ -0.62
VTI1A-208	ENST00000494728		A0A1W2PPV9	198 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	TTLL8	A6PVC2	850 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	RASGRF2	O14827	1237 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	CTSV	O60911	334 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	ALOX12B	O75342	701 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	C1orf105	O95561	183 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	APOA4	P06727	396 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	TPSB2	P20231	275 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	GNLY	P22749	145 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	RPS3	P23396	243 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	GRIA3	P42263	894 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	TTPA	P49638	278 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	GBX1	Q14549	363 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	TPSAB1	Q15661	275 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	TYSND1	Q2T9J0	566 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	NKAIN1	Q4KMZ8	207 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	AARS2	Q5JTZ9	985 aa	Known RBP	11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	SLC6A19	Q695T7	634 aa		11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	JMJD6	Q6NYC1	403 aa	Predicted RBP	11.18	□□□□□ -0.62
VTI1A-208	ENST00000494728	CNST	Q6PJW8	725 aa		11.18	□□□□□ -0.62

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