RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 A0A0A6YYK5 440 aaPredicted RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 A0A1B0GUH1 482 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 A0A1W2PRB8 838 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 PRSS38A1L453 326 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 PRAMEF27A3QJZ7 478 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 DPPA5A6NC42 116 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 PRR23AA6NEV1 266 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 ANKDD1BA6NHY2 528 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 ZNF233A6NK53 670 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 FAM171A2A8MVW0 826 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 TMEM238C9JI98 176 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 LRRN3E7EW58 273 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 C1QTNF3-AMACRE9PGA6 284 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 NPIPB8E9PQR5 432 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 ATP6V1G2-DDX39BF2Z307 99 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 TOR1AO14656 332 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 GNB5O14775 395 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 GRM6O15303 877 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CLOCKO15516 846 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 ZNF208O43345 1280 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CHMP2AO43633 222 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 GAS2O43903 313 aaKnown RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CSDE1O75534 798 aaKnown RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 VAMP5O95183 116 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 OAZ2O95190 189 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CELF2O95319 508 aaKnown RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 ADAMTS2O95450 1211 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 NTSR2O95665 410 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CRYABP02511 175 aaKnown RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CYP2C8P10632 490 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 MCF2P10911 925 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 KRT15P19012 456 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 HNF1AP20823 631 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 GNA11P29992 359 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 DCTDP32321 178 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 DLSTP36957 453 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 FDFT1P37268 417 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 VIPR2P41587 438 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 NAMPTP43490 491 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 SERPINH1P50454 418 aaKnown RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 NKX2-5P52952 324 aaPredicted RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CEBPGP53567 150 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 AP1S2P56377 157 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 LGALS4P56470 323 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 WNT3P56703 355 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CXCR4P61073 352 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 UFM1P61960 85 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 ETF1P62495 437 aaKnown RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 RPL23AP62750 156 aaKnown RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 RPS15P62841 145 aaKnown RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 GNAI1P63096 354 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 POU4F1Q01851 419 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 MALLQ13021 153 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 TOP3AQ13472 1001 aaPredicted RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 GRM4Q14833 912 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 PDK3Q15120 406 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 NPTX1Q15818 432 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 HIF1AQ16665 826 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 TMEM44Q2T9K0 475 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 AP5B1Q2VPB7 878 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 UGT3A2Q3SY77 523 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 C4orf17Q53FE4 359 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 ZNF766Q5HY98 468 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CELF3Q5SZQ8 465 aaKnown RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 GPR157Q5UAW9 335 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 MAP1SQ66K74 1059 aaPredicted RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 PLEKHA7Q6IQ23 1121 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 LRFN4Q6PJG9 635 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 SLC39A5Q6ZMH5 540 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 USP30Q70CQ3 517 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CYFIP1Q7L576 1253 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 GDF7Q7Z4P5 450 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 TRIM69Q86WT6 500 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CATSPERDQ86XM0 798 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 LYSMD2Q8IV50 215 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 VSTM4Q8IW00 320 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CCDC60Q8IWA6 550 aaPredicted RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CCDC28AQ8IWP9 274 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CDK20Q8IZL9 346 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 ABI1Q8IZP0 508 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 NAGSQ8N159 534 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 THEM5Q8N1Q8 247 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 ZGPATQ8N5A5 531 aaKnown RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 OR4C15Q8NGM1 316 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 OR6Q1Q8NGQ2 317 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 PIGBQ92521 554 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 MARS2Q96GW9 593 aaKnown RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 TMEM176AQ96HP8 235 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 CSPG4P5Q96PW8 444 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 SLITRK1Q96PX8 696 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 BTBD9Q96Q07 612 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 NPY6RQ99463 290 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 SEC22CQ9BRL7 303 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 HINT2Q9BX68 163 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 POLDIP3Q9BY77 421 aaKnown RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 MIS12Q9H081 205 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 UPF3AQ9H1J1 476 aaKnown RBP4.11□□□□□ -1.75
BRCA1-220ENST00000492859 UBQLN3Q9H347 655 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 SMOC2Q9H3U7 446 aa4.11□□□□□ -1.75
BRCA1-220ENST00000492859 LRRN3Q9H3W5 708 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms