RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 MGAT4DA6NG13 374 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 RGS13O14921 159 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 PSMD3O43242 534 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 RAD1O60671 282 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 RASSF9O75901 435 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 C1QL1O75973 258 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 RALBP11234 206 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 MTHFD1P11586 935 aaKnown RBP6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 PRKCAP17252 672 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 ITGALP20701 1170 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 PBLDP30039 288 aaPredicted RBP6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 CA5AP35218 305 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 CAPZBP47756 277 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 ZNF140P52738 457 aaPredicted RBP6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 CTSCP53634 463 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 GFERP55789 205 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 GSDMDP57764 484 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 KLF1Q13351 362 aaPredicted RBP6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 MSLNQ13421 630 aaPredicted RBP6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 OLIG2Q13516 323 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 NFE2L1Q14494 772 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 SPARCL1Q14515 664 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 CLCA4Q14CN2 919 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 RPE65Q16518 533 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 GLIPR1L2Q4G1C9 344 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 BCL7AQ4VC05 210 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 FNBP1LQ5T0N5 605 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 SEL1L2Q5TEA6 688 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 METRNLQ641Q3 311 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 KCTD11Q693B1 232 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 DENND5AQ6IQ26 1287 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 CYB5D1Q6P9G0 228 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 FAM83HQ6ZRV2 1179 aaPredicted RBP6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 DET1Q7L5Y6 550 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 PRSS42Q7Z5A4 293 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 SNX20Q7Z614 316 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 KLHDC8BQ8IXV7 354 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 CACNA2D3Q8IZS8 1091 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 NLGN4XQ8N0W4 816 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 ZNF843Q8N446 348 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 NLGN4YQ8NFZ3 816 aaPredicted RBP6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 OR13C4Q8NGS5 318 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 OR2L2Q8NH16 312 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 HEXDCQ8WVB3 486 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 JPH3Q8WXH2 748 aaPredicted RBP6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 GATAD2BQ8WXI9 593 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 NKD1Q969G9 470 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 RTP4Q96DX8 246 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 ZDHHC12Q96GR4 267 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 TMEM121Q9BTD3 319 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 ZNF768Q9H5H4 540 aaKnown RBP6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 ASB8Q9H765 288 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 LRRC40Q9H9A6 602 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 ERVK13-1Q9NX77 482 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 PSMD13Q9UNM6 376 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 R3HDM2Q9Y2K5 976 aaKnown RBP6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 SLC30A1Q9Y6M5 507 aa6.64□□□□□ -1.35
CCDC88A-213ENST00000476903 AGAP14A8MT82 685 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 POLR1CO15160 346 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 LDB2O43679 373 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 KRT86O43790 486 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 STK17BO94768 372 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 METTL18O95568 372 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 AP2A1O95782 977 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 GAS8O95995 478 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 SLC35G4P0C7Q5 338 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 ATP1B2P14415 290 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 LIFP15018 202 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 STIP1P31948 543 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 LEPRP48357 1165 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 PRLHRP49683 370 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 TMPRSS15P98073 1019 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 XIAPP98170 497 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 FOXM1Q08050 763 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 LY6DQ14210 128 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 IL11RAQ14626 422 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 PLEKHN1Q494U1 663 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 GPR33Q49SQ1 333 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 CACHD1Q5VU97 1274 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 IRGCQ6NXR0 463 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 KLHL35Q6PF15 583 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 FAM92BQ6ZTR7 304 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 LINC00523Q86TU6 105 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 NXPE1Q8N323 547 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 SLC16A11Q8NCK7 471 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 TMEM52Q8NDY8 209 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 BOD1L1Q8NFC6 3051 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 GPR150Q8NGU9 434 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 SLC35B2Q8TB61 432 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 ZFPM2Q8WW38 1151 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 RSC1A1Q92681 617 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 KIAA1143Q96AT1 154 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 MED8Q96G25 268 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 DNAJC1Q96KC8 554 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 LINC00615Q96LM1 132 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 C12orf66Q96MD2 445 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 ALS2CR12Q96Q35 445 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 COPS8Q99627 209 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 CTRCQ99895 268 aa6.63□□□□□ -1.35
CCDC88A-213ENST00000476903 CCM2Q9BSQ5 444 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms