RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ERVK13-1Q9NX77 482 aa10.46□□□□□ -0.73
USP54-204ENST00000422491 TRAPPC4Q9Y296 219 aa10.46□□□□□ -0.73
USP54-204ENST00000422491 BTBD3Q9Y2F9 522 aa10.46□□□□□ -0.73
USP54-204ENST00000422491 AP3M1Q9Y2T2 418 aa10.46□□□□□ -0.73
USP54-204ENST00000422491 CSADQ9Y600 493 aa10.46□□□□□ -0.73
USP54-204ENST00000422491 LOC100506127A0A0U1RQW1 187 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 E9PAM4 449 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 CNMDO75829 334 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 PGRP06401 933 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 FPR1P21462 350 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 FMO4P31512 558 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 RFX2P48378 723 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 CSNK2BP67870 215 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 RPP38P78345 283 aaKnown RBP10.46□□□□□ -0.74
USP54-204ENST00000422491 ELP6Q0PNE2 266 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 GTF2H3Q13889 308 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 ABRAXAS2Q15018 415 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 GRIK4Q16099 956 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 PARP15Q460N3 678 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 MARC1Q5VT66 337 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 FAM171A1Q5VUB5 890 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 ERAP2Q6P179 960 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 LYPD8Q6UX82 237 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 SETD6Q8TBK2 473 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 BLOC1S5Q8TDH9 187 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 PHOX2BQ99453 314 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 CPPED1Q9BRF8 314 aaPredicted RBP10.46□□□□□ -0.74
USP54-204ENST00000422491 SP110Q9HB58 689 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 CSNK1G1Q9HCP0 422 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 IL1RAPQ9NPH3 570 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 PSORS1C1Q9UIG5 152 aa10.46□□□□□ -0.74
USP54-204ENST00000422491 TLL1O43897 1013 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 GPR32O75388 356 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 KRT6AP02538 564 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 KRT6BP04259 564 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 TRAPPC2P0DI81 140 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 TRAPPC2BP0DI82 140 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 CYP2A7P20853 494 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 DNAJA1P31689 397 aaKnown RBP10.45□□□□□ -0.74
USP54-204ENST00000422491 SLC19A1P41440 591 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 ARHGDIAP52565 204 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 RPL38P63173 70 aaKnown RBP10.45□□□□□ -0.74
USP54-204ENST00000422491 GPLD1P80108 840 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 ARRDC4Q8NCT1 418 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 FATE1Q969F0 183 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 TMCO6Q96DC7 493 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 SMARCD1Q96GM5 515 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 ZBTB18Q99592 522 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 OSMRQ99650 979 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 KRT84Q9NSB2 600 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 FKBP14Q9NWM8 211 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 PDP1Q9P0J1 537 aaPredicted RBP10.45□□□□□ -0.74
USP54-204ENST00000422491 PTCH2Q9Y6C5 1203 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 A0A0G2JMP0 313 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 HMX3A6NHT5 357 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 MYO1GB0I1T2 1018 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 FAM25AB3EWG3 89 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 FAM25CB3EWG5 89 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 FAM25GB3EWG6 89 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 GJB3O75712 270 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 UGT2B17O75795 530 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 HAPLN1P10915 354 aaPredicted RBP10.45□□□□□ -0.74
USP54-204ENST00000422491 ITGA2P17301 1181 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 RRM2P31350 389 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 CA5AP35218 305 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 NPRL3Q12980 569 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 SLAMF1Q13291 335 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 GPSM1Q86YR5 675 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 CYP4Z2PQ8N1L4 340 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 CADM2Q8N3J6 435 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 NKAPQ8N5F7 415 aaKnown RBP10.45□□□□□ -0.74
USP54-204ENST00000422491 OR4F6Q8NGB9 312 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 FAM120BQ96EK7 910 aaKnown RBP10.45□□□□□ -0.74
USP54-204ENST00000422491 HMCESQ96FZ2 354 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 ZFYVE19Q96K21 471 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 TNKS2Q9H2K2 1166 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 ACOXLQ9NUZ1 547 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 SIRT5Q9NXA8 310 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 PCDHGA6Q9Y5G7 932 aa10.45□□□□□ -0.74
USP54-204ENST00000422491 WASH4PA8MWX3 477 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 H3BRB1 525 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 OR7A17O14581 309 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 CTDSP2O14595 271 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 PER2O15055 1255 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 DIRAS1O95057 198 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 IL6P05231 212 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 CDK1P06493 297 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 CNPP09543 421 aaKnown RBP10.44□□□□□ -0.74
USP54-204ENST00000422491 SLC2A4P14672 509 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 IRF3Q14653 427 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 DDR2Q16832 855 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 MLIPQ5VWP3 458 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 FAHD1Q6P587 224 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 NOXA1Q86UR1 476 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 BPHLQ86WA6 291 aaPredicted RBP10.44□□□□□ -0.74
USP54-204ENST00000422491 RAB43Q86YS6 212 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 MICALL2Q8IY33 904 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 SLC38A6Q8IZM9 456 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 SIX5Q8N196 739 aa10.44□□□□□ -0.74
USP54-204ENST00000422491 TEX26Q8N6G2 289 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms