RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 FDCSPQ8NFU4 85 aa14.2□□□□□ -0.14
CBX3-203ENST00000409747 OR2L8Q8NGY9 312 aa14.2□□□□□ -0.14
CBX3-203ENST00000409747 CPT1CQ8TCG5 803 aa14.2□□□□□ -0.14
CBX3-203ENST00000409747 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.2□□□□□ -0.14
CBX3-203ENST00000409747 PTRH2Q9Y3E5 179 aaKnown RBP14.2□□□□□ -0.14
CBX3-203ENST00000409747 PEX12O00623 359 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 RASGRF2O14827 1237 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 PFDN6O15212 129 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 ZNF185O15231 689 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 NDUFS3O75489 264 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 KLF7O75840 302 aaPredicted RBP14.19□□□□□ -0.14
CBX3-203ENST00000409747 CCDC175P0C221 793 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 ZSCAN5DPP0CG00 497 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 MAGP20916 626 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 VARSP26640 1264 aaKnown RBP14.19□□□□□ -0.14
CBX3-203ENST00000409747 NPY2RP49146 381 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 ARSFP54793 590 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 CDK16Q00536 496 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 SIX1Q15475 284 aaPredicted RBP14.19□□□□□ -0.14
CBX3-203ENST00000409747 NADK2Q4G0N4 442 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 ZNF662Q6ZS27 426 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 VRK3Q8IV63 474 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 OTUD6BQ8N6M0 293 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 CLEC1AQ8NC01 280 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 OR2Y1Q8NGV0 311 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 CFAP61Q8NHU2 1237 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 LKAAEAR1Q8TD35 194 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 MENTQ9BUN1 341 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 HOMER3Q9NSC5 361 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 TREX1Q9NSU2 369 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 EURLQ9NYK6 297 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 NBASA2RRP1 2371 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 LRRK2Q5S007 2527 aa14.19□□□□□ -0.14
CBX3-203ENST00000409747 MAST4O15021 2626 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 IQCF5A8MTL0 148 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 HCRTR1O43613 425 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 SORBS2O94875 1100 aaKnown RBP14.18□□□□□ -0.14
CBX3-203ENST00000409747 PIM1P11309 404 aaPredicted RBP14.18□□□□□ -0.14
CBX3-203ENST00000409747 RPS3P23396 243 aaKnown RBP eCLIP14.18□□□□□ -0.145e-7■□□□□ 8.4
CBX3-203ENST00000409747 NKAIN1Q4KMZ8 207 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 ZC3H12BQ5HYM0 836 aaKnown RBP14.18□□□□□ -0.14
CBX3-203ENST00000409747 RNF187Q5TA31 235 aaPredicted RBP14.18□□□□□ -0.14
CBX3-203ENST00000409747 OTOAQ7RTW8 1153 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 LDB1Q86U70 411 aaPredicted RBP14.18□□□□□ -0.14
CBX3-203ENST00000409747 KRT222Q8N1A0 295 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 LINC01555Q8NAE3 123 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 RAD51AP1Q96B01 352 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 FOPNLQ96NB1 174 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 NUDT9Q9BW91 350 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 P2RY12Q9H244 342 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 MRM3Q9HC36 420 aaKnown RBP14.18□□□□□ -0.14
CBX3-203ENST00000409747 C5AR2Q9P296 337 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 MARCH4Q9P2E8 410 aaPredicted RBP14.18□□□□□ -0.14
CBX3-203ENST00000409747 DHCR7Q9UBM7 475 aaKnown RBP14.18□□□□□ -0.14
CBX3-203ENST00000409747 A6NL46 340 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 FGGP02679 453 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 ALPPP05187 535 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 CCNFP41002 786 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 SF1Q15637 639 aaKnown RBP14.18□□□□□ -0.14
CBX3-203ENST00000409747 TCTE1Q5JU00 501 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 VWA5B1Q5TIE3 1220 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 YOD1Q5VVQ6 348 aaPredicted RBP14.18□□□□□ -0.14
CBX3-203ENST00000409747 ARMC3Q5W041 872 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 MRNIPQ6NTE8 343 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 SDCCAG8Q86SQ7 713 aaPredicted RBP14.18□□□□□ -0.14
CBX3-203ENST00000409747 TRIM58Q8NG06 486 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 MAGEC3Q8TD91 643 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 SKA2Q8WVK7 121 aaPredicted RBP14.18□□□□□ -0.14
CBX3-203ENST00000409747 FKBP10Q96AY3 582 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 NACC2Q96BF6 587 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 PTERQ96BW5 349 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 SMAD5Q99717 465 aaKnown RBP14.18□□□□□ -0.14
CBX3-203ENST00000409747 SLAMF7Q9NQ25 335 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 LZTFL1Q9NQ48 299 aa14.18□□□□□ -0.14
CBX3-203ENST00000409747 A0A1B0GX78 115 aa14.17□□□□□ -0.14
CBX3-203ENST00000409747 H3BMM5 538 aa14.17□□□□□ -0.14
CBX3-203ENST00000409747 TPSB2P20231 275 aa14.17□□□□□ -0.14
CBX3-203ENST00000409747 CRADDP78560 199 aa14.17□□□□□ -0.14
CBX3-203ENST00000409747 SARNPP82979 210 aaKnown RBP14.17□□□□□ -0.14
CBX3-203ENST00000409747 SRSF1Q07955 248 aaKnown RBP eCLIP14.17□□□□□ -0.144e-9■■□□□ 11.7
CBX3-203ENST00000409747 GRB7Q14451 532 aa14.17□□□□□ -0.14
CBX3-203ENST00000409747 TPSAB1Q15661 275 aa14.17□□□□□ -0.14
CBX3-203ENST00000409747 DCAF10Q5QP82 559 aa14.17□□□□□ -0.14
CBX3-203ENST00000409747 JMJD6Q6NYC1 403 aaPredicted RBP14.17□□□□□ -0.14
CBX3-203ENST00000409747 MRPL14Q6P1L8 145 aaKnown RBP14.17□□□□□ -0.14
CBX3-203ENST00000409747 TAX1BP1Q86VP1 789 aa14.17□□□□□ -0.14
CBX3-203ENST00000409747 MCATQ8IVS2 390 aaKnown RBP14.17□□□□□ -0.14
CBX3-203ENST00000409747 PNPLA2Q96AD5 504 aa14.17□□□□□ -0.14
CBX3-203ENST00000409747 KIFC1Q9BW19 673 aa14.17□□□□□ -0.14
CBX3-203ENST00000409747 MAP4K5Q9Y4K4 846 aa14.17□□□□□ -0.14
CBX3-203ENST00000409747 MED13Q9UHV7 2174 aa14.17□□□□□ -0.14
CBX3-203ENST00000409747 FER1L5A0AVI2 2057 aa14.17□□□□□ -0.14
CBX3-203ENST00000409747 DOPEY2Q9Y3R5 2298 aa14.16□□□□□ -0.14
CBX3-203ENST00000409747 IPO13O94829 963 aaKnown RBP14.16□□□□□ -0.14
CBX3-203ENST00000409747 ALAS2P22557 587 aa14.16□□□□□ -0.14
CBX3-203ENST00000409747 NMBRP28336 390 aa14.16□□□□□ -0.14
CBX3-203ENST00000409747 EIF3BP55884 814 aaKnown RBP14.16□□□□□ -0.14
CBX3-203ENST00000409747 GRM7Q14831 915 aa14.16□□□□□ -0.14
CBX3-203ENST00000409747 SLC9A5Q14940 896 aa14.16□□□□□ -0.14
CBX3-203ENST00000409747 NAA25Q14CX7 972 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms