RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 MANSC4A6NHS7 340 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 F8VZ95 297 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 H0YIG0 161 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 HS3ST1O14792 307 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 XPO1O14980 1071 aaKnown RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 MAGEB2O15479 319 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 TRIAP1O43715 76 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PMPCBO75439 489 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PLA2G4BP0C869 781 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 CLUP10909 449 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 FCGR2AP12318 317 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 CCDC130P13994 396 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 CREB1P16220 341 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 DRD5P21918 477 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 GATA3P23771 443 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 ACAT1P24752 427 aaKnown RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 NDUFS1P28331 727 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 SHMT1P34896 483 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 STAT6P42226 847 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 MMP13P45452 471 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 LCP2Q13094 533 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 ARHGAP19Q14CB8 494 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 ARHGEF6Q15052 776 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 RCN1Q15293 331 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 CNGA3Q16281 694 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 TXNRD1Q16881 649 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 LRRC73Q5JTD7 316 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 LDLRAP1Q5SW96 308 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 MIS18BP1Q6P0N0 1132 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 DLEU7Q6UYE1 221 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PACS1Q6VY07 963 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 TMEM173Q86WV6 379 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 OR8J1Q8NGP2 316 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 CKAP2Q8WWK9 683 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 IGSF8Q969P0 613 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 EGLN2Q96KS0 407 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 NUDCD1Q96RS6 583 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PCDHB18PQ96TA0 734 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 CINPQ9BW66 212 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 CAPS2Q9BXY5 557 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 TRIM2Q9C040 744 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 NACA2Q9H009 215 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 VCX2Q9H322 139 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 TMEM245Q9H330 911 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 XKR8Q9H6D3 395 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 GRHL1Q9NZI5 618 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 LSM4Q9Y4Z0 139 aaKnown RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 CLIC4Q9Y696 253 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 ASTN2O75129 1339 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 CFTRP13569 1480 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 ARHGEF40Q8TER5 1519 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 ZNF608Q9ULD9 1512 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 MROH2BQ7Z745 1585 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 A1L4Q6 167 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 GOLGA8OA6NCC3 632 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PROB1E7EW31 1015 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 GOLGA8NF8WBI6 632 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 LGALS8O00214 317 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 MEIS2O14770 477 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PPIP5K2O43314 1243 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 TBX19O60806 448 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PRAMEF11O60813 436 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 RHOBTB1O94844 696 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PGLSO95336 258 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 IGHEP01854 428 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PPP3CBP16298 524 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PSMB4P28070 264 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 CTGFP29279 349 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 EPHB2P29323 1055 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 GKP32189 559 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 RFC2P35250 354 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 MAGEB1P43366 347 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 ZNF75DP51815 510 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 EGR4Q05215 589 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PPP1R8Q12972 351 aaKnown RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 GAB1Q13480 694 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 CYP1B1Q16678 543 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 TCTN1Q2MV58 587 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 TMEM41BQ5BJD5 291 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 C9orf50Q5SZB4 431 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PMF1Q6P1K2 205 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 LRRC70Q7Z2Q7 622 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 AMIGO2Q86SJ2 522 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 NOXA1Q86UR1 476 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 DENND6AQ8IWF6 608 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 CCDC65Q8IXS2 484 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 SLC35F3Q8IY50 421 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 RNF148Q8N7C7 305 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 GBP7Q8N8V2 638 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 FADS6Q8N9I5 356 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 BHLHE23Q8NDY6 225 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 OR52B4Q8NGK2 314 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 OR8K3Q8NH51 312 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 MYCBPAPQ8TBZ2 947 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 DQX1Q8TE96 717 aaKnown RBP3.98□□□□□ -1.77
HMGB1-204ENST00000399489 INPP5DQ92835 1189 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 PEX13Q92968 403 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 NT5C3BQ969T7 300 aa3.98□□□□□ -1.77
HMGB1-204ENST00000399489 MSI2Q96DH6 328 aaKnown RBP3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms