RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 GRHL1Q9NZI5 618 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 PCDHB11Q9Y5F2 797 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 MAU2Q9Y6X3 613 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 ENPP3O14638 875 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 TSPAN1O60635 241 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF12P17014 697 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC6A4P31645 630 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 IQCHQ86VS3 1027 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 AVL9Q8NBF6 648 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 KREMEN1Q96MU8 473 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 TRPV4Q9HBA0 871 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 FBXW11Q9UKB1 542 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 RIMKLBQ9ULI2 386 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 HYKKA2RU49 373 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 PLA2G16P53816 162 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 CWF19L1Q69YN2 538 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 DENND1AQ8TEH3 1009 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 ZFP3Q96NJ6 502 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 SPATA7Q9P0W8 599 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 CFL2Q9Y281 166 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 A0A1B0GVC2 190 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 SEPT4O43236 478 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 PCDH7O60245 1069 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 GDI2P50395 445 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 FAM110CQ1W6H9 321 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 SPIN4Q56A73 249 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF676Q8N7Q3 588 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 CNTN6Q9UQ52 1028 aa12.55□□□□□ -0.4
CCDC88C-204ENST00000389857 TNFRSF10BO14763 440 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC31A1O15431 190 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 TGFB1I1O43294 461 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 AZGP1P25311 298 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 QPCTQ16769 361 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF781Q8N8C0 355 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 C9orf43Q8TAL5 461 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 NKD2Q969F2 451 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 KCTD7Q96MP8 289 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 HNRNPABQ99729 332 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 CRTAC1Q9NQ79 661 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 SIRPGQ9P1W8 387 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 C14orf166Q9Y224 244 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 A0A0U1RQJ8 604 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 NCK1P16333 377 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 MAGEA12P43365 314 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 NFKB2Q00653 900 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 SPAG16Q8N0X2 631 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 PCED1BQ96HM7 432 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 SNX27Q96L92 541 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 ADAM7Q9H2U9 754 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 CCDC86Q9H6F5 360 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 SNTG1Q9NSN8 517 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF878C9JN71 531 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 ENTPD6O75354 484 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 CSTBP04080 98 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 PEPDP12955 493 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 GSTM3P21266 225 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 EDNRAP25101 427 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 HSD3B2P26439 372 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 GBE1Q04446 702 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 TUBB3Q13509 450 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 LINC00471Q8N535 108 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 FAM110BQ8TC76 370 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC25A36Q96CQ1 311 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 NIFKQ9BYG3 293 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 PCDHGC4Q9Y5F7 938 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 SPIN1Q9Y657 262 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 K7EPI3 171 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC7A4O43246 635 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 MYCLP1P12525 358 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 TIGD6Q17RP2 521 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 PLEKHG6Q3KR16 790 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 ALG10Q5BKT4 473 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 PRR23BQ6ZRT6 265 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 NUDT13Q86X67 352 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 OR7D4Q8NG98 312 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF69Q9UC07 566 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 CYTH4Q9UIA0 394 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 TMEM5Q9Y2B1 443 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 TMEM88BA6NKF7 163 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 NPIPA5E9PKD4 350 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 MT-CYBP00156 380 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 ITGB5P18084 799 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 PIK3CBP42338 1070 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 CASP7P55210 303 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 EIF5AL1Q6IS14 154 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 FEM1AQ9BSK4 669 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 EHD1Q9H4M9 534 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 NPIPA1Q9UND3 350 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 LRCH4O75427 683 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 SRCP12931 536 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 ANXA8P13928 327 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 VWA5B1Q5TIE3 1220 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 ZNF227Q86WZ6 799 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 CIR1Q86X95 450 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 SLC44A3Q8N4M1 653 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 SUN5Q8TC36 379 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 ADAD1Q96M93 576 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 PCDHB18PQ96TA0 734 aa12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 TFB2MQ9H5Q4 396 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-204ENST00000389857 FKBPLQ9UIM3 349 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms