RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 OR2L8Q8NGY9 312 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 ASB11Q8WXH4 323 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 DLG3Q92796 817 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 TRAPPC9Q96Q05 1148 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 PKP4Q99569 1192 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 CPNE1Q99829 537 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 PITPNM3Q9BZ71 974 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 FAM129AQ9BZQ8 928 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 TWSG1Q9GZX9 223 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 CDC42EP4Q9H3Q1 356 aaKnown RBP12.92□□□□□ -0.34
VPS28-202ENST00000377348 CAB39LQ9H9S4 337 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 FBXO8Q9NRD0 319 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 C1GALT1Q9NS00 363 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 WDR70Q9NW82 654 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 ADAMTS6Q9UKP5 1117 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 MTO1Q9Y2Z2 717 aaKnown RBP12.92□□□□□ -0.34
VPS28-202ENST00000377348 PCDHGA3Q9Y5H0 932 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 ADAMTS20P59510 1910 aa12.92□□□□□ -0.34
VPS28-202ENST00000377348 GFYI3L273 518 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 MYO1CO00159 1063 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 EIF3FO00303 357 aaPredicted RBP12.91□□□□□ -0.34
VPS28-202ENST00000377348 SYF2O95926 243 aaKnown RBP12.91□□□□□ -0.34
VPS28-202ENST00000377348 ITPKBP27987 946 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 DEKP35659 375 aaKnown RBP12.91□□□□□ -0.34
VPS28-202ENST00000377348 RGS4P49798 205 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 RAB15P59190 212 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 HSD11B2P80365 405 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 TGIF1Q15583 401 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 TEX35Q5T0J7 233 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 DCAF12Q5T6F0 453 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 TMEM164Q5U3C3 297 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 CEACAM20Q6UY09 585 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 UBE2R2Q712K3 238 aaPredicted RBP12.91□□□□□ -0.34
VPS28-202ENST00000377348 KMT5CQ86Y97 462 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 RASGRP3Q8IV61 690 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 CEP97Q8IW35 865 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 IFT20Q8IY31 132 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 GSPT2Q8IYD1 628 aaKnown RBP12.91□□□□□ -0.34
VPS28-202ENST00000377348 D2HGDHQ8N465 521 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 ZNF248Q8NDW4 579 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 OR9A1PQ8NGU1 263 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 MAGEC3Q8TD91 643 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 KCNE4Q8WWG9 221 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 MRRFQ96E11 262 aaKnown RBP12.91□□□□□ -0.34
VPS28-202ENST00000377348 RBBP8Q99708 897 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 DDA1Q9BW61 102 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 TXNDC16Q9P2K2 825 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 BTRCQ9Y297 605 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 KLHL20Q9Y2M5 609 aa12.91□□□□□ -0.34
VPS28-202ENST00000377348 KMT2BQ9UMN6 2715 aaPredicted RBP12.9□□□□□ -0.34
VPS28-202ENST00000377348 A0A0J9YY10 115 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 ZBTB14O43829 449 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 SPAG6O75602 509 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 TIAF1O95411 115 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 ACSL3O95573 720 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 ZNF28P17035 718 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 MAP4P27816 1152 aaKnown RBP12.9□□□□□ -0.34
VPS28-202ENST00000377348 PSMB5P28074 263 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 GP5P40197 560 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 IL2P60568 153 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 CLN3Q13286 438 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 TUBB3Q13509 450 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 KIR2DS3Q14952 304 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 GPR19Q15760 415 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 ZIC1Q15915 447 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 CYP2A13Q16696 494 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 SLC5A12Q1EHB4 618 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 SUSD1Q6UWL2 747 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 RELL1Q8IUW5 271 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 SPACA3Q8IXA5 215 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 CARFQ8N187 725 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 MYO1HQ8N1T3 1032 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 PPFIBP2Q8ND30 876 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 RAB11FIP5Q9BXF6 653 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 ASPSCR1Q9BZE9 553 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 FAM60AQ9NP50 221 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 FGF21Q9NSA1 209 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 SPATA7Q9P0W8 599 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 IKZF3Q9UKT9 509 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 ACSL6Q9UKU0 697 aa12.9□□□□□ -0.34
VPS28-202ENST00000377348 ITPR1Q14643 2758 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 SDK2Q58EX2 2172 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 A0A087WV48 116 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 TEX51A0A1B0GUA7 166 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 A0A1W2PPV9 198 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 RRP8O43159 456 aaKnown RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 PHGDHO43175 533 aaKnown RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 KLK10O43240 276 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 PRICKLE3O43900 615 aaPredicted RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 SLC16A8O95907 504 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 FAM153BP0C7A2 387 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 ERGP11308 486 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 ZNF37AP17032 561 aaPredicted RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 MAGP20916 626 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 YBX1P67809 324 aaKnown RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 ACY1Q03154 408 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 SRSF6Q13247 344 aaKnown RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 TSTA3Q13630 321 aaPredicted RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 COL9A2Q14055 689 aaPredicted RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 USP10Q14694 798 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms