RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 LRRTM3Q86VH5 581 aa11.34□□□□□ -0.59
SYNE1-204ENST00000367248 TAPBPLQ9BX59 468 aa11.34□□□□□ -0.59
SYNE1-204ENST00000367248 CTPS2Q9NRF8 586 aa11.34□□□□□ -0.59
SYNE1-204ENST00000367248 TEX264Q9Y6I9 313 aa11.34□□□□□ -0.59
SYNE1-204ENST00000367248 IFNW1P05000 195 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 PTDSS1P48651 473 aaKnown RBP11.33□□□□□ -0.6
SYNE1-204ENST00000367248 PCYT1AP49585 367 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 HNMTP50135 292 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 OXR1Q8N573 874 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 LPGAT1Q92604 370 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 SLC47A1Q96FL8 570 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 XKR8Q9H6D3 395 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 MYOCOSA0A1B0GUC4 107 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 DLX3O60479 287 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 ITGA1P56199 1179 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 BTN3A2P78410 334 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 BNIP1Q12981 228 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 DHCR24Q15392 516 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 RPTNQ6XPR3 784 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 TMLHEQ9NVH6 421 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 CLN6Q9NWW5 311 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 SLCO3A1Q9UIG8 710 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 MAGEB17A8MXT2 336 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 KMOO15229 486 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 ADAMTS4O75173 837 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 ZNF37AP17032 561 aaPredicted RBP11.33□□□□□ -0.6
SYNE1-204ENST00000367248 PRDX6P30041 224 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 TRIM16LQ309B1 348 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 TCEAL5Q5H9L2 206 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 SLC9B2Q86UD5 537 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 TEX47Q8TBZ9 253 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 SCAMP4Q969E2 229 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 TRAPPC9Q96Q05 1148 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 DUSP26Q9BV47 211 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 CALML5Q9NZT1 146 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 A0A1W2PQU0 124 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 TRIM43BA6NCK2 446 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 SLC7A1P30825 629 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 GRIA2P42262 883 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 PRR5P85299 388 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 LRRC26Q2I0M4 334 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 ZC3H14Q6PJT7 736 aaKnown RBP11.33□□□□□ -0.6
SYNE1-204ENST00000367248 MAPK15Q8TD08 544 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 IMP4Q96G21 291 aaKnown RBP11.33□□□□□ -0.6
SYNE1-204ENST00000367248 UHRF1Q96T88 793 aaPredicted RBP11.33□□□□□ -0.6
SYNE1-204ENST00000367248 SLC2A11Q9BYW1 496 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 MUC13Q9H3R2 512 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 SLC32A1Q9H598 525 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 PRDM8Q9NQV8 689 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 PGAP2Q9UHJ9 254 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 OGDHLQ9ULD0 1010 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 SNX7Q9UNH6 387 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 U3KQV3 271 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 PDPK1O15530 556 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 PGLSO95336 258 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 BCL10O95999 233 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 RAB8AP61006 207 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 DTNBP1Q96EV8 351 aa11.33□□□□□ -0.6
SYNE1-204ENST00000367248 NLE1Q9NVX2 485 aaPredicted RBP11.33□□□□□ -0.6
SYNE1-204ENST00000367248 PCDH7O60245 1069 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 CBSLP0DN79 551 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 CBSP35520 551 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 CCR8P51685 355 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 ERVK-8P63133 956 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 FAM174BQ3ZCQ3 159 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 GALPQ9UBC7 116 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 SERTAD3Q9UJW9 196 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 PPM1HQ9ULR3 514 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 RNGTTO60942 597 aaKnown RBP11.32□□□□□ -0.6
SYNE1-204ENST00000367248 UBXN7O94888 489 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 GSRP00390 522 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 IDH3AP50213 366 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 ID2Q02363 134 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 PTPRCAPQ14761 206 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 SPPL2CQ8IUH8 684 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 PQLC1Q8N2U9 271 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 ZNF671Q8TAW3 534 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 ROPN1LQ96C74 230 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 SLC25A36Q96CQ1 311 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 CDK15Q96Q40 435 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 HRASLS2Q9NWW9 162 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 KIAA0100Q14667 2235 aaKnown RBP11.32□□□□□ -0.6
SYNE1-204ENST00000367248 GRID2O43424 1007 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 AP2A2O94973 939 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 YAP1P46937 504 aaKnown RBP11.32□□□□□ -0.6
SYNE1-204ENST00000367248 HMGCS1Q01581 520 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 NEK5Q6P3R8 708 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 SUSD1Q6UWL2 747 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 TTC9BQ8N6N2 239 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 RAB7BQ96AH8 199 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 DGCR6LQ9BY27 220 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 GJD2Q9UKL4 321 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 ERI3O43414 337 aaKnown RBP11.32□□□□□ -0.6
SYNE1-204ENST00000367248 LATO43561 262 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 FOXN2P32314 431 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 PREPP48147 710 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 SOX9P48436 509 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 ELOCQ15369 112 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 ZNF805Q5CZA5 627 aa11.32□□□□□ -0.6
SYNE1-204ENST00000367248 PTCRAQ6ISU1 281 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms