RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 PCK2Q16822 640 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 FAM69AQ5T7M9 428 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 METAP1DQ6UB28 335 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-203ENST00000353578 SEMA6DQ8NFY4 1073 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 SLC7A13Q8TCU3 470 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 SGTBQ96EQ0 304 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 BRD7Q9NPI1 651 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 PNPOQ9NVS9 261 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 TSPAN16Q9UKR8 245 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 KCNA5P22460 613 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 PRKXP51817 358 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 C14orf28Q4W4Y0 310 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 ARL13AQ5H913 290 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-203ENST00000353578 HSDL2Q6YN16 418 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 OR10R2Q8NGX6 335 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 SETD7Q8WTS6 366 aaKnown RBP12.38□□□□□ -0.43
COL6A3-203ENST00000353578 RAD9AQ99638 391 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 NIPAL2Q9H841 368 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 TMEM27Q9HBJ8 222 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 FBXO5Q9UKT4 447 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 SPIN1Q9Y657 262 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-203ENST00000353578 F5H0A9 414 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-203ENST00000353578 MT-CO1P00395 513 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 PDYNP01213 254 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 LINC00032P0C843 101 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 ESX1Q8N693 406 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 FKBP10Q96AY3 582 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 TTYH2Q9BSA4 534 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 OPA3Q9H6K4 179 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 MINPP1Q9UNW1 487 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 SLC27A6Q9Y2P4 619 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 C10orf71Q711Q0 1435 aa12.38□□□□□ -0.43
COL6A3-203ENST00000353578 TUBAL3A6NHL2 446 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 KCNU1A8MYU2 1149 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 LCMT2O60294 686 aaKnown RBP12.37□□□□□ -0.43
COL6A3-203ENST00000353578 IKBKEQ14164 716 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 ZNF169Q14929 603 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-203ENST00000353578 LRRC58Q96CX6 371 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 SLC38A1Q9H2H9 487 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 MIOSQ9NXC5 875 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 MRPS33Q9Y291 106 aaKnown RBP12.37□□□□□ -0.43
COL6A3-203ENST00000353578 ZNF780BQ9Y6R6 833 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 TEX13CA0A0J9YWL9 993 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-203ENST00000353578 CDC7O00311 574 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 URODP06132 367 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 SOX9P48436 509 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 ALDH7A1P49419 539 aaKnown RBP12.37□□□□□ -0.43
COL6A3-203ENST00000353578 VLDLRP98155 873 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 PCBD2Q9H0N5 130 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 OXSMQ9NWU1 459 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 AP2A1O95782 977 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 H2AFB2P0C5Z0 115 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 SSTR3P32745 418 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-203ENST00000353578 EIF4HQ15056 248 aaKnown RBP12.37□□□□□ -0.43
COL6A3-203ENST00000353578 BCL2A1Q16548 175 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 XKR5Q6UX68 686 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 ASB18Q6ZVZ8 466 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 BRSK2Q8IWQ3 736 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 WACQ9BTA9 647 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 TGOLN2O43493 480 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 TLL1O43897 1013 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 CCR10P46092 362 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 SLC41A1Q8IVJ1 513 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 MAPK15Q8TD08 544 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 MECRQ9BV79 373 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 C8orf33Q9H7E9 229 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-203ENST00000353578 ZFP14Q9HCL3 533 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 HOXA2O43364 376 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 TPT1P13693 172 aaKnown RBP12.37□□□□□ -0.43
COL6A3-203ENST00000353578 ENDOUP21128 410 aaKnown RBP12.37□□□□□ -0.43
COL6A3-203ENST00000353578 AXLP30530 894 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 CAP2P40123 477 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 GPAT3Q53EU6 434 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 CHSY3Q70JA7 882 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 OR10H4Q8NGA5 316 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 HACL1Q9UJ83 578 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 GNG8Q9UK08 70 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 RGS9O75916 674 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-203ENST00000353578 TLR1Q15399 786 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 AGAP7PQ5VUJ5 663 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 IL23RQ5VWK5 629 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 GLB1LQ6UWU2 654 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 SLC16A9Q7RTY1 509 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 BBS1Q8NFJ9 593 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 OTUB2Q96DC9 234 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 HHATLQ9HCP6 504 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 ATRNO75882 1429 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 FAM149AA5PLN7 773 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 ANKRD54Q6NXT1 300 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 EPGNQ6UW88 154 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 CAND1Q86VP6 1230 aaKnown RBP12.37□□□□□ -0.43
COL6A3-203ENST00000353578 COPS5Q92905 334 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 RPF2Q9H7B2 306 aaKnown RBP12.37□□□□□ -0.43
COL6A3-203ENST00000353578 TSPAN15O95858 294 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 UGT3A2Q3SY77 523 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 ALG3Q92685 438 aa12.37□□□□□ -0.43
COL6A3-203ENST00000353578 SC5DO75845 299 aa12.36□□□□□ -0.43
COL6A3-203ENST00000353578 CNTN5O94779 1100 aa12.36□□□□□ -0.43
COL6A3-203ENST00000353578 ERCC1P07992 297 aaPredicted RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms