RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CCDC149Q6ZUS6 474 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 CLVS1Q8IUQ0 354 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-202ENST00000352886 ERI1Q8IV48 349 aaKnown RBP21.23■□□□□ 0.99
SHMT1-202ENST00000352886 AURKBQ96GD4 344 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-202ENST00000352886 P2RY13Q9BPV8 354 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 NPLQ9BXD5 320 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-202ENST00000352886 EMILIN2Q9BXX0 1053 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 CEP44Q9C0F1 390 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 PAIP1Q9H074 479 aaKnown RBP21.23■□□□□ 0.99
SHMT1-202ENST00000352886 KAT8Q9H7Z6 458 aaKnown RBP21.23■□□□□ 0.99
SHMT1-202ENST00000352886 HCFC1R1Q9NWW0 138 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 TACR1P25103 407 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 SLC6A12P48065 614 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 HNMTP50135 292 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 LILRA6Q6PI73 481 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 ANKRD46Q86W74 232 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 ZDHHC13Q8IUH4 622 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 MICU2Q8IYU8 434 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 DRAXINQ8NBI3 349 aaPredicted RBP21.23■□□□□ 0.99
SHMT1-202ENST00000352886 MYLIPQ8WY64 445 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 MUS81Q96NY9 551 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 SERHLQ9NQF3 203 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 SLC22A14Q9Y267 594 aa21.23■□□□□ 0.99
SHMT1-202ENST00000352886 PRRC2BQ5JSZ5 2229 aaKnown RBP21.22■□□□□ 0.99
SHMT1-202ENST00000352886 CST1P01037 141 aa21.22■□□□□ 0.99
SHMT1-202ENST00000352886 S100A3P33764 101 aa21.22■□□□□ 0.99
SHMT1-202ENST00000352886 YAP1P46937 504 aaKnown RBP21.22■□□□□ 0.99
SHMT1-202ENST00000352886 IST1P53990 364 aa21.22■□□□□ 0.99
SHMT1-202ENST00000352886 GDPD4Q6W3E5 623 aa21.22■□□□□ 0.99
SHMT1-202ENST00000352886 KREMEN2Q8NCW0 462 aa21.22■□□□□ 0.99
SHMT1-202ENST00000352886 SCAMP4Q969E2 229 aa21.22■□□□□ 0.99
SHMT1-202ENST00000352886 NCLNQ969V3 563 aa21.22■□□□□ 0.99
SHMT1-202ENST00000352886 BBS2Q9BXC9 721 aa21.22■□□□□ 0.99
SHMT1-202ENST00000352886 G3V2T6 193 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 ERN1O75460 977 aaKnown RBP21.21■□□□□ 0.99
SHMT1-202ENST00000352886 PRKD3O94806 890 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 SCELO95171 688 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 GSNP06396 782 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 MPC1LP0DKB6 136 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 THRBP10828 461 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 PABPC1P11940 636 aaKnown RBP21.21■□□□□ 0.99
SHMT1-202ENST00000352886 CSF2RAP15509 400 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 ITPKAP23677 461 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 GPR65Q8IYL9 337 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 C10orf111Q8N326 155 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 SDCCAG3Q96C92 435 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 INPP5KQ9BT40 448 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 KCNH6Q9H252 994 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 HPS4Q9NQG7 708 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 DNAJB9Q9UBS3 223 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 B3GALT4O96024 378 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 PRPS2P11908 318 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 SDC1P18827 310 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 CYP2A7P20853 494 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 VEGFBP49765 207 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 POLR2LP62875 67 aaKnown RBP21.21■□□□□ 0.99
SHMT1-202ENST00000352886 LAPTM5Q13571 262 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 CCNYL2Q5T2Q4 361 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 LRIF1Q5T3J3 769 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 ATG9BQ674R7 924 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 L3MBTL4Q8NA19 623 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 ISOC1Q96CN7 298 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 APIPQ96GX9 242 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 CPPED1Q9BRF8 314 aaPredicted RBP21.21■□□□□ 0.99
SHMT1-202ENST00000352886 ATG10Q9H0Y0 220 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 TIMMDC1Q9NPL8 285 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 EBF1Q9UH73 591 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 PPT2Q9UMR5 302 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 AP3M1Q9Y2T2 418 aa21.21■□□□□ 0.99
SHMT1-202ENST00000352886 GFYI3L273 518 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 PRAMEF4O60810 478 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 CXCL14O95715 111 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 PGS1Q32NB8 556 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 PLEKHS1Q5SXH7 462 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 PRAMEF9Q5VWM5 478 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 CHST15Q7LFX5 561 aaPredicted RBP21.2■□□□□ 0.99
SHMT1-202ENST00000352886 SLC22A15Q8IZD6 547 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 OR52E4Q8NGH9 312 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 OR2A12Q8NGT7 310 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 DNAJB8Q8NHS0 232 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 FAM120BQ96EK7 910 aaKnown RBP21.2■□□□□ 0.99
SHMT1-202ENST00000352886 DTNBP1Q96EV8 351 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 CMTM7Q96FZ5 175 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 OSBPL6Q9BZF3 934 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 RMND5AQ9H871 391 aa21.2■□□□□ 0.99
SHMT1-202ENST00000352886 A0A096LPI6 279 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 CARNS1A5YM72 827 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 FAM220BPB1ANY3 271 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 CREG1O75629 220 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 LRATO95237 230 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 ITGB8P26012 769 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 ELK4P28324 431 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 NRIP1P48552 1158 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 SP140Q13342 867 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 PON2Q15165 354 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 TBC1D25Q3MII6 688 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 GPR149Q86SP6 731 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 TMEM132CQ8N3T6 1108 aa21.2■□□□□ 0.98
SHMT1-202ENST00000352886 BEND7Q8N7W2 519 aaPredicted RBP21.2■□□□□ 0.98
SHMT1-202ENST00000352886 ELMO1Q92556 727 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms