RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 TMEM265A0A087WTH1 108 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 ANTXRLA6NF34 631 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 SLC16A5O15375 505 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 TSPAN6O43657 245 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 SGTAO43765 313 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 ATG13O75143 517 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 C5AR1P21730 350 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 HMOX2P30519 316 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 WASP42768 502 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 KIR2DL1P43626 348 aaPredicted RBP12.51□□□□□ -0.41
CLK3-201ENST00000345005 EMP3P54852 163 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 STX1BP61266 288 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 BNIP2Q12982 314 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 CST6Q15828 149 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 FBXO48Q5FWF7 155 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 PIP5KL1Q5T9C9 394 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 SDE2Q6IQ49 451 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 RASGEF1AQ8N9B8 481 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 OR2T34Q8NGX1 318 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 OR2T3Q8NH03 318 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 PNPT1Q8TCS8 783 aaKnown RBP12.51□□□□□ -0.41
CLK3-201ENST00000345005 ATP6V1E2Q96A05 226 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 ZNF382Q96SR6 550 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 NPAS2Q99743 824 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 EGFL8Q99944 293 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 CCM2Q9BSQ5 444 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 C9orf16Q9BUW7 83 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 SLC12A9Q9BXP2 914 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 NUSAP1Q9BXS6 441 aaKnown RBP12.51□□□□□ -0.41
CLK3-201ENST00000345005 PARVBQ9HBI1 364 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 TRPV5Q9NQA5 729 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 OLAHQ9NV23 265 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 FAIMQ9NVQ4 179 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 TMEM181Q9P2C4 612 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 MBD1Q9UIS9 605 aaPredicted RBP12.51□□□□□ -0.41
CLK3-201ENST00000345005 CNOT6Q9ULM6 557 aaKnown RBP12.51□□□□□ -0.41
CLK3-201ENST00000345005 DNAJC15Q9Y5T4 150 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 NUMA1Q14980 2115 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 C7orf72A4D263 438 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 OR2AG2A6NM03 316 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 INPP4BO15327 924 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 NRP2O60462 931 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 VPS4BO75351 444 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 SLCO2B1O94956 709 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 GUCA1CO95843 209 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 CHEK2O96017 543 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 ANXA5P08758 320 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 UROSP10746 265 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 ZNF12P17014 697 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 IGFBP4P22692 258 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 MYF6P23409 242 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 TIE1P35590 1138 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 DPP6P42658 865 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 GPR1P46091 355 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 PRLHRP49683 370 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 CBX3Q13185 183 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 SP140Q13342 867 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 GTF2H2Q13888 395 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 BOP1Q14137 746 aaKnown RBP12.51□□□□□ -0.41
CLK3-201ENST00000345005 PHKG1Q16816 387 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 AAK1Q2M2I8 961 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 ZNF648Q5T619 568 aaPredicted RBP12.51□□□□□ -0.41
CLK3-201ENST00000345005 RAET1GQ6H3X3 334 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 GTF2H2CQ6P1K8 395 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 GPRIN3Q6ZVF9 776 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 ERMP1Q7Z2K6 904 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 UBTD2Q8WUN7 234 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 TWIST2Q8WVJ9 160 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 ASB11Q8WXH4 323 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 TFAP2CQ92754 450 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 ESAMQ96AP7 390 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 PPWD1Q96BP3 646 aaKnown RBP12.51□□□□□ -0.41
CLK3-201ENST00000345005 C19orf60Q96EN9 201 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 SLC45A3Q96JT2 553 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 CD244Q9BZW8 370 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 PALMDQ9NP74 551 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 TBC1D23Q9NUY8 699 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 WWOXQ9NZC7 414 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 TMEM9Q9P0T7 183 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 NDUFAF1Q9Y375 327 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 TMED5Q9Y3A6 229 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 SNX13Q9Y5W8 968 aa12.51□□□□□ -0.41
CLK3-201ENST00000345005 DOCK9Q9BZ29 2069 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 F5P12259 2224 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 COL4A2P08572 1712 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 PABPN1LA6NDY0 278 aaKnown RBP12.5□□□□□ -0.41
CLK3-201ENST00000345005 TRIM64A6NGJ6 449 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 MID1O15344 667 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 TAPBPO15533 448 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 HIST1H2AGP0C0S8 130 aaPredicted RBP12.5□□□□□ -0.41
CLK3-201ENST00000345005 HIST1H2ADP20671 130 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 NTSR1P30989 418 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 CTHP32929 405 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 RPIAP49247 311 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 SEC13P55735 322 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 NHSL2Q5HYW2 709 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 TMEM198Q66K66 360 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 ZNF776Q68DI1 518 aaPredicted RBP12.5□□□□□ -0.41
CLK3-201ENST00000345005 REP15Q6BDI9 236 aa12.5□□□□□ -0.41
CLK3-201ENST00000345005 GPR153Q6NV75 609 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms