RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 CFAP54Q96N23 3096 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 ANTXRLA6NF34 631 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 KPNA3O00505 521 aaPredicted RBP10.08□□□□□ -0.8
LIMA1-201ENST00000341247 POLR2EP19388 210 aaKnown RBP10.08□□□□□ -0.8
LIMA1-201ENST00000341247 MSH3P20585 1137 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 PRKACGP22612 351 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 IRS1P35568 1242 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 CDKN2CP42773 168 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 MTHFRP42898 656 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 BDKRB1P46663 353 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 CTSCP53634 463 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 RPS14P62263 151 aaKnown RBP10.08□□□□□ -0.8
LIMA1-201ENST00000341247 MESP2Q0VG99 397 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 GRIN2CQ14957 1233 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 LAPTM4AQ15012 233 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 KIAA0040Q15053 153 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 RBBP5Q15291 538 aaKnown RBP10.08□□□□□ -0.8
LIMA1-201ENST00000341247 TCEAL5Q5H9L2 206 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 ZNF784Q8NCA9 323 aaPredicted RBP10.08□□□□□ -0.8
LIMA1-201ENST00000341247 SMURF2Q9HAU4 748 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 CLK4Q9HAZ1 481 aaKnown RBP10.08□□□□□ -0.8
LIMA1-201ENST00000341247 VPS4AQ9UN37 437 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 COMMD3-BMI1R4GMX3 469 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 FADS2P1A8MWK0 482 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 TSPAN6O43657 245 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 PRKD3O94806 890 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 RASAL1O95294 804 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 CTSLP07711 333 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 HLA-EP13747 358 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 S100A3P33764 101 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 OR4F3Q6IEY1 312 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 NTMT1Q9BV86 223 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 CRISPLD2Q9H0B8 497 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 SMPD3Q9NY59 655 aaPredicted RBP10.08□□□□□ -0.8
LIMA1-201ENST00000341247 MAGEL2Q9UJ55 1249 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 PCDHB3Q9Y5E6 796 aa10.08□□□□□ -0.8
LIMA1-201ENST00000341247 CASP9P55211 416 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 IL1RL1Q01638 556 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 FOXD4Q12950 439 aaPredicted RBP10.07□□□□□ -0.8
LIMA1-201ENST00000341247 NAE1Q13564 534 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 ACOX1Q15067 660 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 SYTL3Q4VX76 610 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 USP39Q53GS9 565 aaKnown RBP10.07□□□□□ -0.8
LIMA1-201ENST00000341247 INTS11Q5TA45 600 aaKnown RBP10.07□□□□□ -0.8
LIMA1-201ENST00000341247 CYP2U1Q7Z449 544 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 PROSER1Q86XN7 944 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 POF1BQ8WVV4 589 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 LYSMD1Q96S90 227 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 HAUS8Q9BT25 410 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 BDH2Q9BUT1 245 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 VCX3AQ9NNX9 186 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 TRPS1Q9UHF7 1281 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 ERVW-1Q9UQF0 538 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 MOSPD3O75425 235 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 CPSF4O95639 269 aaKnown RBP10.07□□□□□ -0.8
LIMA1-201ENST00000341247 FCGR1AP12314 374 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 GGT1P19440 569 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 EEF1B2P24534 225 aaKnown RBP10.07□□□□□ -0.8
LIMA1-201ENST00000341247 ELK4P28324 431 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 IRF8Q02556 426 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 FAM98BQ52LJ0 330 aaKnown RBP10.07□□□□□ -0.8
LIMA1-201ENST00000341247 XKR6Q5GH73 641 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 ZBTB46Q86UZ6 589 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 OR7A2PQ8NGA2 310 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 MCOLN3Q8TDD5 553 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 ASB11Q8WXH4 323 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 FAM120BQ96EK7 910 aaKnown RBP10.07□□□□□ -0.8
LIMA1-201ENST00000341247 MCCC1Q96RQ3 725 aaPredicted RBP10.07□□□□□ -0.8
LIMA1-201ENST00000341247 HEPHQ9BQS7 1158 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 PPT2Q9UMR5 302 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 PLXNB3Q9ULL4 1909 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 AGAP14A8MT82 685 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 ARNTLO00327 626 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 LPCAT2Q7L5N7 544 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 C12orf76Q8N812 135 aaPredicted RBP10.07□□□□□ -0.8
LIMA1-201ENST00000341247 GPR156Q8NFN8 814 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 OSCP1Q8WVF1 389 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 SLC12A9Q9BXP2 914 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 EMILIN2Q9BXX0 1053 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 CLMPQ9H6B4 373 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 NTN4Q9HB63 628 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 EXD2Q9NVH0 621 aa10.07□□□□□ -0.8
LIMA1-201ENST00000341247 ELOVL7A1L3X0 281 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 H0YJX3 145 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 CXCR6O00574 342 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 CST1P01037 141 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 ALBP02768 609 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 CDH1P12830 882 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 SDC1P18827 310 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 CYP2A7P20853 494 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 MAP4P27816 1152 aaKnown RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 PDHA2P29803 388 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 SLC5A2P31639 672 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 NNMTP40261 264 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 POLR2LP62875 67 aaKnown RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 MAD2L1Q13257 205 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-201ENST00000341247 SLC14A1Q13336 389 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 LSAMPQ13449 338 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 NEDD8Q15843 81 aa10.06□□□□□ -0.8
LIMA1-201ENST00000341247 SLC36A3Q495N2 470 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms