RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 PSMD4P55036 377 aaKnown RBP6.71□□□□□ -1.34
SF3B1-201ENST00000335508 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.71□□□□□ -1.34
SF3B1-201ENST00000335508 TXNDC5Q8NBS9 432 aaKnown RBP6.71□□□□□ -1.34
SF3B1-201ENST00000335508 CXCL16Q9H2A7 254 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 ANKHQ9HCJ1 492 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 EPHA6Q9UF33 1036 aa6.71□□□□□ -1.34
SF3B1-201ENST00000335508 KIR2DS5A0A0G2JLQ3 304 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 A0A0G2JNG1 304 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 KIR2DS3K7RE56 304 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 CHRM1P11229 460 aaPredicted RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 TCF3P15923 654 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 DCDC1P59894 354 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 CDKL1Q00532 357 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 KIR2DS5Q14953 304 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 CYTH1Q15438 398 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 FAM78AQ5JUQ0 283 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 CXorf57Q6NSI4 855 aaKnown RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 C16orf62Q7Z3J2 963 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 GKN2Q86XP6 184 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 RBM15BQ8NDT2 890 aaKnown RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 MTERF3Q96E29 417 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 PITHD1Q9GZP4 211 aaPredicted RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 MYH7BA7E2Y1 1941 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 PRORSD1PA6NEY8 169 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 UGDHO60701 494 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 MTX2O75431 263 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 IFNA16P05015 189 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 SLC6A4P31645 630 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 IRS1P35568 1242 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 ETV3P41162 512 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 SLC25A3Q00325 362 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 MLLT1Q03111 559 aaPredicted RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 OCA2Q04671 838 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 TNK2Q07912 1038 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 DMPKQ09013 629 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 SLBPQ14493 270 aaKnown RBP eCLIP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 TYSND1Q2T9J0 566 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 PSAPL1Q6NUJ1 521 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 SCIMPQ6UWF3 145 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 SIDT2Q8NBJ9 832 aaKnown RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 ADCY4Q8NFM4 1077 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 DNAJB14Q8TBM8 379 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 NAT6Q93015 286 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 PELOQ9BRX2 385 aaKnown RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 VPS4AQ9UN37 437 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 GSC2O15499 205 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 RPSAP08865 295 aaKnown RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 DHRS4L1P0CG22 281 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 TSPAN8P19075 237 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 AOC1P19801 751 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 JAK1P23458 1154 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 MAGEA8P43361 318 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 POLR2JP52435 117 aaKnown RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 MPP2Q14168 576 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 C6orf136Q5SQH8 315 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 TTC33Q6PID6 262 aaPredicted RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 FBXW8Q8N3Y1 598 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 CHST14Q8NCH0 376 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 OR2A12Q8NGT7 310 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 METTL21AQ8WXB1 218 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 KXD1Q9BQD3 176 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 LRRC3Q9BY71 257 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 OSBPL7Q9BZF2 842 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 RDH14Q9HBH5 336 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 ZNF282Q9UDV7 671 aaPredicted RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 SPO11Q9Y5K1 396 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 LAMA4Q16363 1823 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 A0A1W2PP18 115 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 GRXCR2A6NFK2 248 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 PRAMEF26H0Y7S4 382 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 AP3D1O14617 1153 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 SUV39H1O43463 412 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 TNFP01375 233 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 FGF4P08620 206 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 CEBPBP17676 345 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 MAGEA3P43357 314 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 ARF5P84085 180 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 LIPJQ5W064 366 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 RSPO2Q6UXX9 243 aaPredicted RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 SLC9B2Q86UD5 537 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 MICU2Q8IYU8 434 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 TTC29Q8NA56 475 aaPredicted RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 OR6Y1Q8NGX8 325 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 PYCR2Q96C36 320 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 MAGED4Q96JG8 741 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 PKMYT1Q99640 499 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 APOL4Q9BPW4 351 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 MARCH4Q9P2E8 410 aaPredicted RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 RTTNQ86VV8 2226 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 GRXCR1A8MXD5 290 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 CLK3P49761 638 aaKnown RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 ACVR1Q04771 509 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 RUNX1T1Q06455 604 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 PCBP2Q15366 365 aaKnown RBP eCLIP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 ANKRD54Q6NXT1 300 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 GCNT7Q6ZNI0 430 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 CDHR3Q6ZTQ4 885 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 ISCA2Q86U28 154 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 EEF1AKMT1Q8WVE0 214 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 SLC5A11Q8WWX8 675 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms