RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 GDAP2Q9NXN4 497 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 GALPQ9UBC7 116 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 UPB1Q9UBR1 384 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 FZD4Q9ULV1 537 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 ST14Q9Y5Y6 855 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 GTPBP1O00178 669 aaKnown RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 CPNE3O75131 537 aaKnown RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 CLIC3O95833 236 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 HMGCS1Q01581 520 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 GALNT2Q10471 571 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 CBLBQ13191 982 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 TSTQ16762 297 aaKnown RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 SIRPB2Q5JXA9 342 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 USP50Q70EL3 339 aaPredicted RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 CYS1Q717R9 158 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 SNX20Q7Z614 316 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 C2CD4AQ8NCU7 369 aaPredicted RBP12.59□□□□□ -0.39
COL3A1-201ENST00000304636 ZNF248Q8NDW4 579 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 CDKN2AIPNLQ96HQ2 116 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 TM9SF3Q9HD45 589 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 FBXO10Q9UK96 956 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 TLR6Q9Y2C9 796 aa12.59□□□□□ -0.39
COL3A1-201ENST00000304636 ISPDA4D126 451 aa12.58□□□□□ -0.39
COL3A1-201ENST00000304636 FBP2O00757 339 aa12.58□□□□□ -0.39
COL3A1-201ENST00000304636 MTRF1O75570 445 aaKnown RBP12.58□□□□□ -0.39
COL3A1-201ENST00000304636 HPRP00739 348 aa12.58□□□□□ -0.39
COL3A1-201ENST00000304636 ABHD18Q0P651 414 aa12.58□□□□□ -0.39
COL3A1-201ENST00000304636 JAZF1Q86VZ6 243 aa12.58□□□□□ -0.39
COL3A1-201ENST00000304636 GEMIN6Q8WXD5 167 aaKnown RBP12.58□□□□□ -0.39
COL3A1-201ENST00000304636 SLC29A3Q9BZD2 475 aa12.58□□□□□ -0.39
COL3A1-201ENST00000304636 RNF38Q9H0F5 515 aa12.58□□□□□ -0.39
COL3A1-201ENST00000304636 MED11Q9P086 117 aa12.58□□□□□ -0.39
COL3A1-201ENST00000304636 GTF2IRD1Q9UHL9 959 aa12.58□□□□□ -0.39
COL3A1-201ENST00000304636 SLC27A6Q9Y2P4 619 aa12.58□□□□□ -0.39
COL3A1-201ENST00000304636 PLOD2O00469 737 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 SRPRAP08240 638 aaKnown RBP12.58□□□□□ -0.4
COL3A1-201ENST00000304636 CHRM5P08912 532 aaPredicted RBP12.58□□□□□ -0.4
COL3A1-201ENST00000304636 IFI30P13284 250 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 EFNA1P20827 205 aaPredicted RBP12.58□□□□□ -0.4
COL3A1-201ENST00000304636 IVDP26440 423 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 ELK4P28324 431 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 MAZP56270 477 aaKnown RBP12.58□□□□□ -0.4
COL3A1-201ENST00000304636 EMX2Q04743 252 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 PCDH1Q08174 1060 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 MAB21L1Q13394 359 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 GANABQ14697 944 aaKnown RBP12.58□□□□□ -0.4
COL3A1-201ENST00000304636 CDCA2Q69YH5 1023 aaPredicted RBP12.58□□□□□ -0.4
COL3A1-201ENST00000304636 KLHL36Q8N4N3 616 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 KBTBD7Q8WVZ9 684 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 STYXL1Q9Y6J8 313 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 SOWAHBA6NEL2 793 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 AURKAO14965 403 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 NIPSNAP2O75323 286 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 PAPSS2O95340 614 aaPredicted RBP12.58□□□□□ -0.4
COL3A1-201ENST00000304636 SERPINA3P01011 423 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 TFPTP0C1Z6 253 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 PORP16435 677 aaPredicted RBP12.58□□□□□ -0.4
COL3A1-201ENST00000304636 HSPB3Q12988 150 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 DUOXA1Q1HG43 343 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 SWI5Q1ZZU3 235 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 ZNF613Q6PF04 617 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 SERPINA13PQ6UXR4 307 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.58□□□□□ -0.4
COL3A1-201ENST00000304636 ANKFN1Q8N957 763 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 GOLM1Q8NBJ4 401 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 CORO1BQ9BR76 489 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 NECTIN3Q9NQS3 549 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 LMO7Q8WWI1 1683 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 MYOCOSA0A1B0GUC4 107 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 SDHDO14521 159 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 OR1D2P34982 312 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 ZNF181Q2M3W8 571 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 ADGRG2Q8IZP9 1017 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 USP29Q9HBJ7 922 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 IKZF2Q9UKS7 526 aa12.58□□□□□ -0.4
COL3A1-201ENST00000304636 IQCMA0A1B0GVH7 501 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 KLRG2A4D1S0 409 aaPredicted RBP12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PDCD5O14737 125 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 SNNO75324 88 aaPredicted RBP12.57□□□□□ -0.4
COL3A1-201ENST00000304636 STT3AP46977 705 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 SLC10A7Q0GE19 358 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 CEACAM7Q14002 265 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PIM3Q86V86 326 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 RANBP3LQ86VV4 465 aaPredicted RBP12.57□□□□□ -0.4
COL3A1-201ENST00000304636 KIAA1191Q96A73 305 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 MGME1Q9BQP7 344 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PRORSD1PA6NEY8 169 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 ARL5CA6NH57 179 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 TREHO43280 583 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 ITGB1P05556 798 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 FAM163BP0C2L3 166 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 G6PDP11413 515 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 GRIA2P42262 883 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PRR5P85299 388 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 FAM46CQ5VWP2 391 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 OR8D1Q8WZ84 308 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PLD4Q96BZ4 506 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 FRMD6Q96NE9 622 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 ZFP3Q96NJ6 502 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 RSPH9Q9H1X1 276 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms