RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 HIF1AQ16665 826 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 TUBB8Q3ZCM7 444 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 TCTE1Q5JU00 501 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 DARS2Q6PI48 645 aaKnown RBP14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 FAM180AQ6UWF9 173 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 CNGA4Q8IV77 575 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 FLVCR1-AS1Q8TAF5 88 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 ACTL9Q8TC94 416 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 ELMO1Q92556 727 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 TTC1Q99614 292 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 SEMA3GQ9NS98 782 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 CROCCQ5TZA2 2017 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 CCL22O00626 93 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 E2F3O00716 465 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 DSCR3O14972 297 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 FKBP9O95302 570 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 STSP08842 583 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 OR56A5P0C7T3 313 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 ATXN8OSP0DMR3 200 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 PTPN7P35236 360 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 GCGRP47871 477 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 RAB28P51157 221 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 GRM7Q14831 915 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 DNAJC21Q5F1R6 531 aaKnown RBP14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 ZC3H12BQ5HYM0 836 aaKnown RBP14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 RPUSD3Q6P087 351 aaKnown RBP14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 MYO7BQ6PIF6 2116 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 TTLL10Q6ZVT0 673 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 MCATQ8IVS2 390 aaKnown RBP14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 VSTM4Q8IW00 320 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 KLHDC8BQ8IXV7 354 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 PIANPQ8IYJ0 282 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 BCORP1Q8N888 145 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 CDKN2AIPNLQ96HQ2 116 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 CALR3Q96L12 384 aaKnown RBP14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 PHF12Q96QT6 1004 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 LMF1Q96S06 567 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 C10orf88Q9H8K7 445 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 LRRC40Q9H9A6 602 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 ENAMQ9NRM1 1142 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 SLC22A11Q9NSA0 550 aa14.19□□□□□ -0.14
CCDC88B-201ENST00000301897 SLC5A10A0PJK1 596 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 SOCS6O14544 535 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 PJA2O43164 708 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 MAGP20916 626 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 PKLRP30613 574 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 MAGEA1P43355 309 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 MARCKSL1P49006 195 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 BRD3Q15059 726 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 RBBP7Q16576 425 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 NKG7Q16617 165 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 FAM214AQ32MH5 1076 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 KIRREL2Q6UWL6 708 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 ISLR2Q6UXK2 745 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 ARHGEF18Q6ZSZ5 1173 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 TTC29Q8NA56 475 aaPredicted RBP14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 CCDC110Q8TBZ0 833 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 CNDP1Q96KN2 507 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 SPSB2Q99619 263 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 SLX1AQ9BQ83 275 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 TSSK1BQ9BXA7 367 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 GOLPH3Q9H4A6 298 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 CUTCQ9NTM9 273 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 CSAG2Q9Y5P2 127 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 HS3ST3B1Q9Y662 390 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 FBN2P35556 2912 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 F8P00451 2351 aa14.18□□□□□ -0.14
CCDC88B-201ENST00000301897 PKDREJQ9NTG1 2253 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 CCDC168Q8NDH2 2452 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 TACC2O95359 2948 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 ARHGAP10A1A4S6 786 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 BHMG1C9JSJ3 638 aaPredicted RBP14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 MASP2O00187 686 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 PSMD3O43242 534 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 ZG16O60844 167 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 TJP3O95049 919 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 S1PR4O95977 384 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 CTSBP07858 339 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 PSMA3P25788 255 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 CTNNA1P35221 906 aaKnown RBP14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 PPARGP37231 505 aaPredicted RBP14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 CARSP49589 748 aaKnown RBP14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 SPARCL1Q14515 664 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 INAQ16352 499 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 PARP6Q2NL67 630 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 KCTD11Q693B1 232 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 SP5Q6BEB4 398 aaPredicted RBP14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 KRT35Q92764 455 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 THOC3Q96J01 351 aaKnown RBP14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 OSBPL8Q9BZF1 889 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 OLAHQ9NV23 265 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 COPG2Q9UBF2 871 aa14.17□□□□□ -0.14
CCDC88B-201ENST00000301897 AKR1B15C9JRZ8 316 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 PRSS44E7EML9 344 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 USP1O94782 785 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 PRSS56P0CW18 603 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 TPBGLP0DKB5 382 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 FDXRP22570 491 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 MSNP26038 577 aaKnown RBP14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms