RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 CCSMST1Q4G0I0 132 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 PDCD4Q53EL6 469 aaKnown RBP13.87□□□□□ -0.19
C9orf3-202ENST00000297979 KIAA1161Q6NSJ0 714 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 HPS6Q86YV9 775 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 FBXO15Q8NCQ5 510 aaPredicted RBP13.87□□□□□ -0.19
C9orf3-202ENST00000297979 USP7Q93009 1102 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 CCDC124Q96CT7 223 aaKnown RBP13.87□□□□□ -0.19
C9orf3-202ENST00000297979 TEX101Q9BY14 249 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 DPEP2Q9H4A9 486 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 MBNL1Q9NR56 388 aaKnown RBP13.87□□□□□ -0.19
C9orf3-202ENST00000297979 FARSBQ9NSD9 589 aaKnown RBP13.87□□□□□ -0.19
C9orf3-202ENST00000297979 NKX1-2Q9UD57 310 aaPredicted RBP13.87□□□□□ -0.19
C9orf3-202ENST00000297979 ZNF490Q9ULM2 529 aaPredicted RBP13.87□□□□□ -0.19
C9orf3-202ENST00000297979 CCL27Q9Y4X3 112 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 BRWD1Q9NSI6 2320 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 CFLARO15519 480 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 MRPS21P82921 87 aaKnown RBP13.87□□□□□ -0.19
C9orf3-202ENST00000297979 EMX2Q04743 252 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 NFE2L1Q14494 772 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 CPSF6Q16630 551 aaKnown RBP eCLIP13.87□□□□□ -0.19
C9orf3-202ENST00000297979 AGTRAPQ6RW13 159 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 TRIM46Q7Z4K8 759 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 EFCAB3Q8N7B9 438 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 TP53I13Q8NBR0 393 aaPredicted RBP13.87□□□□□ -0.19
C9orf3-202ENST00000297979 MAGEB10Q96LZ2 347 aaPredicted RBP13.87□□□□□ -0.19
C9orf3-202ENST00000297979 CDRT15Q96T59 188 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 PKP4Q99569 1192 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 LGR4Q9BXB1 951 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 WDR26Q9H7D7 661 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 L3MBTL1Q9Y468 752 aa13.87□□□□□ -0.19
C9orf3-202ENST00000297979 PRR23AA6NEV1 266 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 H0Y3Z8 333 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 KRT36O76013 467 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 SORBS2O94875 1100 aaKnown RBP13.86□□□□□ -0.19
C9orf3-202ENST00000297979 PSMG1O95456 288 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 C1orf105O95561 183 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 PAK4O96013 591 aaPredicted RBP13.86□□□□□ -0.19
C9orf3-202ENST00000297979 ADPRHP54922 357 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 SGCGQ13326 291 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 INPP5AQ14642 412 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 AP5B1Q2VPB7 878 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 HACD2Q6Y1H2 254 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 LRRTM4Q86VH4 590 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 KLHDC8AQ8IYD2 350 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 SAMD14Q8IZD0 417 aaPredicted RBP13.86□□□□□ -0.19
C9orf3-202ENST00000297979 L3MBTL4Q8NA19 623 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 C1QTNF2Q9BXJ5 285 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 SCML1Q9UN30 329 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 SNX6Q9UNH7 406 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 PRKAB1Q9Y478 270 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 PCYT1BQ9Y5K3 369 aaPredicted RBP13.86□□□□□ -0.19
C9orf3-202ENST00000297979 KCNE1BA0A087WTH5 132 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 A0A1W2PQU0 124 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 SLC16A8O95907 504 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 IMPA1P29218 277 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 SMAD4Q13485 552 aaKnown RBP13.86□□□□□ -0.19
C9orf3-202ENST00000297979 IMPG1Q17R60 797 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 TMEM259Q4ZIN3 620 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 SGO1Q5FBB7 561 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 ALKBH2Q6NS38 261 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 THOC6Q86W42 341 aaKnown RBP13.86□□□□□ -0.19
C9orf3-202ENST00000297979 PCYOX1LQ8NBM8 494 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 KLK6Q92876 244 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 TMEM45AQ9NWC5 275 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 NOP53Q9NZM5 478 aaKnown RBP13.86□□□□□ -0.19
C9orf3-202ENST00000297979 ZIM2Q9NZV7 527 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 ZMAT5Q9UDW3 170 aaKnown RBP13.86□□□□□ -0.19
C9orf3-202ENST00000297979 ZNHIT2Q9UHR6 403 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 POMPQ9Y244 141 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 NDUFAF1Q9Y375 327 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 LINC00854A0A1B0GVQ3 168 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 RNGTTO60942 597 aaKnown RBP13.86□□□□□ -0.19
C9orf3-202ENST00000297979 CAPN3P20807 821 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 GCKP35557 465 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 TRIM23P36406 574 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 DPP6P42658 865 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 PSME3P61289 254 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 NAE1Q13564 534 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 SMU1Q2TAY7 513 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 PIGGQ5H8A4 983 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 BLOC1S3Q6QNY0 202 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 FAM83HQ6ZRV2 1179 aaPredicted RBP13.86□□□□□ -0.19
C9orf3-202ENST00000297979 AMZ2Q86W34 360 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 TSPEARQ8WU66 669 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 MED8Q96G25 268 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 CIDEBQ9UHD4 219 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 OR1A2Q9Y585 309 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 PCDHGA7Q9Y5G6 932 aa13.86□□□□□ -0.19
C9orf3-202ENST00000297979 GPR89AB7ZAQ6 455 aa13.85□□□□□ -0.19
C9orf3-202ENST00000297979 C9JVG2 144 aa13.85□□□□□ -0.19
C9orf3-202ENST00000297979 ANGPT2O15123 496 aa13.85□□□□□ -0.19
C9orf3-202ENST00000297979 MBTPS2O43462 519 aa13.85□□□□□ -0.19
C9orf3-202ENST00000297979 UGDHO60701 494 aa13.85□□□□□ -0.19
C9orf3-202ENST00000297979 SLC22A3O75751 556 aa13.85□□□□□ -0.19
C9orf3-202ENST00000297979 GPR89BP0CG08 455 aa13.85□□□□□ -0.19
C9orf3-202ENST00000297979 HOXD11P31277 338 aaPredicted RBP13.85□□□□□ -0.19
C9orf3-202ENST00000297979 HALP42357 657 aa13.85□□□□□ -0.19
C9orf3-202ENST00000297979 KCNK10P57789 538 aa13.85□□□□□ -0.19
C9orf3-202ENST00000297979 RPA4Q13156 261 aa13.85□□□□□ -0.19
C9orf3-202ENST00000297979 RCN1Q15293 331 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms