RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TMBIM1Q969X1 311 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 APIPQ96GX9 242 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 PAWRQ96IZ0 340 aaKnown RBP19.56■□□□□ 0.72
VPS53-201ENST00000291074 BDH2Q9BUT1 245 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 EMILIN2Q9BXX0 1053 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 HPS4Q9NQG7 708 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 SPHK2Q9NRA0 654 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 DDX18Q9NVP1 670 aaKnown RBP19.56■□□□□ 0.72
VPS53-201ENST00000291074 SAGE1Q9NXZ1 904 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 LIMD1Q9UGP4 676 aa19.56■□□□□ 0.72
VPS53-201ENST00000291074 PLXNA2O75051 1894 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 SGTAO43765 313 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 RAP2AP10114 183 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 SLC5A2P31639 672 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 CAPGP40121 348 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 IST1P53990 364 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 ARSIQ5FYB1 569 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 EGLN2Q96KS0 407 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 INPP5KQ9BT40 448 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 TDP1Q9NUW8 608 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 ADGRE2Q9UHX3 823 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 PCDHB14Q9Y5E9 798 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 CDH23Q9H251 3354 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 RECQLP46063 649 aaPredicted RBP19.55■□□□□ 0.72
VPS53-201ENST00000291074 PLCL1Q15111 1095 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 FAM98BQ52LJ0 330 aaKnown RBP19.55■□□□□ 0.72
VPS53-201ENST00000291074 RUNDC3AQ59EK9 446 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 CCDC115Q96NT0 180 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 PAIP1Q9H074 479 aaKnown RBP19.55■□□□□ 0.72
VPS53-201ENST00000291074 FAM83DQ9H4H8 585 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 PCDH12Q9NPG4 1184 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 PPT2Q9UMR5 302 aa19.55■□□□□ 0.72
VPS53-201ENST00000291074 FADS2P1A8MWK0 482 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 TULP3O75386 442 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 GMNNO75496 209 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 CHRNB3Q05901 458 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 LAPTM5Q13571 262 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 KCTD21Q4G0X4 260 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 BORAQ6PGQ7 559 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 SERHLQ9NQF3 203 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 ERVW-1Q9UQF0 538 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 INVSQ9Y283 1065 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 TRBV5-3A0A0A0MS03 114 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 CTSLP07711 333 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 SDC1P18827 310 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 MTHFRP42898 656 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 POLR2LP62875 67 aaKnown RBP19.54■□□□□ 0.72
VPS53-201ENST00000291074 CDKL4Q5MAI5 379 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 APOLD1Q96LR9 279 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 ZSWIM3Q96MP5 696 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 RIOK2Q9BVS4 552 aaKnown RBP19.54■□□□□ 0.72
VPS53-201ENST00000291074 SNX6Q9UNH7 406 aa19.54■□□□□ 0.72
VPS53-201ENST00000291074 A0A1B0GVG6 124 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 ELOVL7A1L3X0 281 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 PABPN1LA6NDY0 278 aaKnown RBP19.53■□□□□ 0.72
VPS53-201ENST00000291074 UPK3BL1B0FP48 263 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 UPK3BL2E5RIL1 263 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 H0Y858 1186 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 GFYI3L273 518 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 EIF3FO00303 357 aaPredicted RBP19.53■□□□□ 0.72
VPS53-201ENST00000291074 C1QCP02747 245 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 RHOP08100 348 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 C7P10643 843 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 VIPR1P32241 457 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 HALP42357 657 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 CDKN2CP42773 168 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 RBBP5Q15291 538 aaKnown RBP19.53■□□□□ 0.72
VPS53-201ENST00000291074 PGS1Q32NB8 556 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 ZDHHC20Q5W0Z9 365 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 LILRA3Q8N6C8 439 aaPredicted RBP19.53■□□□□ 0.72
VPS53-201ENST00000291074 HEPHQ9BQS7 1158 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 EBPLQ9BY08 206 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 GORASP2Q9H8Y8 452 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 PCDHGA11Q9Y5H2 935 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 CXorf51AA0A1B0GTR3 108 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 CXCR6O00574 342 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 DEAF1O75398 565 aaPredicted RBP19.53■□□□□ 0.72
VPS53-201ENST00000291074 MPC1LP0DKB6 136 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 CYP2A7P20853 494 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 CLDN8P56748 225 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 TUBA4AP68366 448 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 MAP7Q14244 749 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 PLEKHS1Q5SXH7 462 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 ELMSAN1Q6PJG2 1045 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 TCAIMQ8N3R3 496 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 TNIP2Q8NFZ5 429 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 FRS2Q8WU20 508 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 FAM162AQ96A26 154 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 LIN28AQ9H9Z2 209 aaKnown RBP19.53■□□□□ 0.72
VPS53-201ENST00000291074 C8orf4Q9NR00 106 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 DNAJC11Q9NVH1 559 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 GPRC5BQ9NZH0 403 aa19.53■□□□□ 0.72
VPS53-201ENST00000291074 WASH3PC4AMC7 463 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 S100A3P33764 101 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 YAP1P46937 504 aaKnown RBP19.52■□□□□ 0.72
VPS53-201ENST00000291074 PPP1R8Q12972 351 aaKnown RBP19.52■□□□□ 0.72
VPS53-201ENST00000291074 CHIT1Q13231 466 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 GGTA1PQ4G0N0 100 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 BRAT1Q6PJG6 821 aa19.52■□□□□ 0.72
VPS53-201ENST00000291074 CYP2U1Q7Z449 544 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms