RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 SOWAHCQ53LP3 525 aaPredicted RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 GNASQ5JWF2 1037 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 CAPN13Q6MZZ7 669 aaPredicted RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 SHQ1Q6PI26 577 aaKnown RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 Q6ZPB1 254 aaPredicted RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 ZNF598Q86UK7 904 aaKnown RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 SCAIQ8N9R8 606 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 PSD4Q8NDX1 1056 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 RHOXF1Q8NHV9 184 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 PHF10Q8WUB8 498 aaKnown RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 FAM120BQ96EK7 910 aaKnown RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 EGLN2Q96KS0 407 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 KATNAL1Q9BW62 490 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 SPC25Q9HBM1 224 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 ITM2CQ9NQX7 267 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 C1orf109Q9NX04 203 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 GPRC5BQ9NZH0 403 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 UBA2Q9UBT2 640 aaPredicted RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 PCDHB8Q9UN66 801 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 ERVK-11Q9UQG0 969 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 DHRS7Q9Y394 339 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 PLXNA3P51805 1871 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 CBX4O00257 560 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 PCDHGA12O60330 932 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 WBP4O75554 376 aaKnown RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 KCNK2O95069 426 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 LRATO95237 230 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 IL6P05231 212 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 CD36P16671 472 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 PSMA3P25788 255 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 LIPAP38571 399 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 EIF2DP41214 584 aaKnown RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 GNPDA1P46926 289 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 ALDH7A1P49419 539 aaKnown RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 NEK2P51955 445 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 HUNKP57058 714 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 VLDLRP98155 873 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 CREMQ03060 361 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 USP39Q53GS9 565 aaKnown RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 ZC3H12BQ5HYM0 836 aaKnown RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 COLEC12Q5KU26 742 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 FAM171A1Q5VUB5 890 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 KDM4DQ6B0I6 523 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 AHSA2Q719I0 299 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 HIPK1Q86Z02 1210 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 FAM83FQ8NEG4 500 aaPredicted RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 OR52E4Q8NGH9 312 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 C8orf48Q96LL4 319 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 ASPSCR1Q9BZE9 553 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 RNF167Q9H6Y7 350 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 LRTM1Q9HBL6 345 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 ZNF229Q9UJW7 825 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 OSGIN1Q9UJX0 560 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 PPT2Q9UMR5 302 aa12.11□□□□□ -0.47
NUP88-201ENST00000225696 ARIH1Q9Y4X5 557 aaPredicted RBP12.11□□□□□ -0.47
NUP88-201ENST00000225696 A0A096LPI6 279 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 RGS14O43566 566 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 ULK1O75385 1050 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 ESR1P03372 595 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 ALPIP09923 528 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 HOXB9P17482 250 aaPredicted RBP12.1□□□□□ -0.47
NUP88-201ENST00000225696 CTPS1P17812 591 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 C21orf33P30042 268 aaPredicted RBP12.1□□□□□ -0.47
NUP88-201ENST00000225696 MAGEA2P43356 314 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 CLCN4P51793 760 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 FAM189BP81408 668 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 DSC3Q14574 896 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 CPSF6Q16630 551 aaKnown RBP eCLIP12.1□□□□□ -0.47
NUP88-201ENST00000225696 SNX20Q7Z614 316 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 SERINC5Q86VE9 423 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 LYSMD2Q8IV50 215 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 APH1BQ8WW43 257 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 TSSK3Q96PN8 268 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 ACPTQ9BZG2 426 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 AMBNQ9NP70 447 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 QPCTLQ9NXS2 382 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.1□□□□□ -0.47
NUP88-201ENST00000225696 CAB39Q9Y376 341 aaPredicted RBP12.1□□□□□ -0.47
NUP88-201ENST00000225696 ORC6Q9Y5N6 252 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 GMPPBQ9Y5P6 360 aa12.1□□□□□ -0.47
NUP88-201ENST00000225696 KRT87PA6NCN2 255 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 FAM220BPB1ANY3 271 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 F5H5T6 163 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 MANBAO00462 879 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 SCAMP3O14828 347 aaKnown RBP12.09□□□□□ -0.47
NUP88-201ENST00000225696 TBX1O43435 398 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 OAZ2O95190 189 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 CD160O95971 181 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 ALOX5P09917 674 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 GRK5P34947 590 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 PTGER3P43115 390 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 NR4A2P43354 598 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 ST13P50502 369 aaKnown RBP12.09□□□□□ -0.47
NUP88-201ENST00000225696 IL18R1Q13478 541 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 MAD2L1BPQ15013 274 aaPredicted RBP12.09□□□□□ -0.47
NUP88-201ENST00000225696 STEAP3Q658P3 488 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 ATG9BQ674R7 924 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 DOK6Q6PKX4 331 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 FAM151BQ6UXP7 276 aa12.09□□□□□ -0.47
NUP88-201ENST00000225696 RSPO2Q6UXX9 243 aaPredicted RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms