RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	AMOT	Q4VCS5	1084 aa		13.96	□□□□□ -0.17
SCN1A-222	ENST00000642141	C5	P01031	1676 aa		13.95	□□□□□ -0.18
SCN1A-222	ENST00000642141	ERVV-2	B6SEH9	535 aa		13.95	□□□□□ -0.18
SCN1A-222	ENST00000642141	GNPAT	O15228	680 aa		13.95	□□□□□ -0.18
SCN1A-222	ENST00000642141	HSP90AB1	P08238	724 aa	Known RBP	13.95	□□□□□ -0.18
SCN1A-222	ENST00000642141	NFATC2IP	Q8NCF5	419 aa		13.95	□□□□□ -0.18
SCN1A-222	ENST00000642141	UTRN	P46939	3433 aa		13.94	□□□□□ -0.18
SCN1A-222	ENST00000642141	KDM6A	O15550	1401 aa	Predicted RBP	13.94	□□□□□ -0.18
SCN1A-222	ENST00000642141	PTCD1	O75127	700 aa	Known RBP	13.94	□□□□□ -0.18
SCN1A-222	ENST00000642141	SLC4A9	Q96Q91	983 aa		13.94	□□□□□ -0.18
SCN1A-222	ENST00000642141	C4B	P0C0L5	1744 aa		13.93	□□□□□ -0.18
SCN1A-222	ENST00000642141	DIAPH1	O60610	1272 aa	Known RBP	13.93	□□□□□ -0.18
SCN1A-222	ENST00000642141	FLAD1	Q8NFF5	587 aa		13.93	□□□□□ -0.18
SCN1A-222	ENST00000642141	QSER1	Q2KHR3	1735 aa		13.93	□□□□□ -0.18
SCN1A-222	ENST00000642141	U2SURP	O15042	1029 aa	Known RBP	13.92	□□□□□ -0.18
SCN1A-222	ENST00000642141	LGR6	Q9HBX8	967 aa		13.92	□□□□□ -0.18
SCN1A-222	ENST00000642141	TAF1L	Q8IZX4	1826 aa		13.92	□□□□□ -0.18
SCN1A-222	ENST00000642141	GOLGB1	Q14789	3259 aa	Known RBP	13.91	□□□□□ -0.18
SCN1A-222	ENST00000642141	WWC3	Q9ULE0	1092 aa		13.91	□□□□□ -0.18
SCN1A-222	ENST00000642141	KDR	P35968	1356 aa		13.91	□□□□□ -0.18
SCN1A-222	ENST00000642141	HMGB2	P26583	209 aa	Known RBP	13.9	□□□□□ -0.18
SCN1A-222	ENST00000642141	MTHFSD	Q2M296	383 aa	Known RBP	13.9	□□□□□ -0.18
SCN1A-222	ENST00000642141	MAP3K5	Q99683	1374 aa		13.9	□□□□□ -0.18
SCN1A-222	ENST00000642141	SSFA2	P28290	1259 aa		13.89	□□□□□ -0.19
SCN1A-222	ENST00000642141	AKAP4	Q5JQC9	854 aa		13.89	□□□□□ -0.19
SCN1A-222	ENST00000642141	YBX3	P16989	372 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
SCN1A-222	ENST00000642141	SLC39A6	Q13433	755 aa		13.88	□□□□□ -0.19
SCN1A-222	ENST00000642141	TRAPPC3L	Q5T215	181 aa		13.88	□□□□□ -0.19
SCN1A-222	ENST00000642141	RTCB	Q9Y3I0	505 aa	Known RBP	13.88	□□□□□ -0.19
SCN1A-222	ENST00000642141	PLEKHG2	Q9H7P9	1386 aa		13.87	□□□□□ -0.19
SCN1A-222	ENST00000642141	ARHGEF1	Q92888	912 aa	Known RBP	13.87	□□□□□ -0.19
SCN1A-222	ENST00000642141	RNMT	O43148	476 aa	Known RBP	13.86	□□□□□ -0.19
SCN1A-222	ENST00000642141	SLC52A2	Q9HAB3	445 aa		13.86	□□□□□ -0.19
SCN1A-222	ENST00000642141	COL24A1	Q17RW2	1714 aa		13.86	□□□□□ -0.19
SCN1A-222	ENST00000642141	UBR3	Q6ZT12	1888 aa		13.86	□□□□□ -0.19
SCN1A-222	ENST00000642141	MMP10	P09238	476 aa		13.85	□□□□□ -0.19
SCN1A-222	ENST00000642141	RFC4	P35249	363 aa		13.85	□□□□□ -0.19
SCN1A-222	ENST00000642141	CRKL	P46109	303 aa	Known RBP	13.85	□□□□□ -0.19
SCN1A-222	ENST00000642141	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.85	□□□□□ -0.19
SCN1A-222	ENST00000642141	CD2AP	Q9Y5K6	639 aa		13.85	□□□□□ -0.19
SCN1A-222	ENST00000642141	NPC1L1	Q9UHC9	1359 aa		13.84	□□□□□ -0.19
SCN1A-222	ENST00000642141	RPS6KA4	O75676	772 aa		13.84	□□□□□ -0.19
SCN1A-222	ENST00000642141	RC3H1	Q5TC82	1133 aa	Known RBP	13.84	□□□□□ -0.19
SCN1A-222	ENST00000642141	DNAJC10	Q8IXB1	793 aa		13.84	□□□□□ -0.19
SCN1A-222	ENST00000642141	SRP68	Q9UHB9	627 aa	Known RBP	13.84	□□□□□ -0.19
SCN1A-222	ENST00000642141	PPP2R1A	P30153	589 aa		13.83	□□□□□ -0.2
SCN1A-222	ENST00000642141	PHACTR3	Q96KR7	559 aa		13.83	□□□□□ -0.2
SCN1A-222	ENST00000642141	CFAP53	Q96M91	514 aa		13.83	□□□□□ -0.2
SCN1A-222	ENST00000642141	CNTNAP4	Q9C0A0	1308 aa		13.83	□□□□□ -0.2
SCN1A-222	ENST00000642141	COL3A1	P02461	1466 aa	Predicted RBP	13.82	□□□□□ -0.2
SCN1A-222	ENST00000642141	INTS5	Q6P9B9	1019 aa	Known RBP	13.82	□□□□□ -0.2
SCN1A-222	ENST00000642141	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.81	□□□□□ -0.2
SCN1A-222	ENST00000642141	GYS1	P13807	737 aa		13.81	□□□□□ -0.2
SCN1A-222	ENST00000642141	PRKAR2B	P31323	418 aa		13.81	□□□□□ -0.2
SCN1A-222	ENST00000642141	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
SCN1A-222	ENST00000642141	NLGN1	Q8N2Q7	840 aa		13.81	□□□□□ -0.2
SCN1A-222	ENST00000642141	IL17RE	Q8NFR9	667 aa		13.81	□□□□□ -0.2
SCN1A-222	ENST00000642141	GNAT3	A8MTJ3	354 aa		13.8	□□□□□ -0.2
SCN1A-222	ENST00000642141	GRIN3B	O60391	1043 aa		13.8	□□□□□ -0.2
SCN1A-222	ENST00000642141	SCN11A	Q9UI33	1791 aa		13.8	□□□□□ -0.2
SCN1A-222	ENST00000642141		A0A0G2JLW4	131 aa		13.79	□□□□□ -0.2
SCN1A-222	ENST00000642141	CYP19A1	P11511	503 aa	Predicted RBP	13.79	□□□□□ -0.2
SCN1A-222	ENST00000642141	ADRA2B	P18089	450 aa		13.79	□□□□□ -0.2
SCN1A-222	ENST00000642141	TEF	Q10587	303 aa		13.79	□□□□□ -0.2
SCN1A-222	ENST00000642141	FKBP8	Q14318	412 aa		13.79	□□□□□ -0.2
SCN1A-222	ENST00000642141	GAS2L2	Q8NHY3	880 aa		13.79	□□□□□ -0.2
SCN1A-222	ENST00000642141	RSPH6A	Q9H0K4	717 aa		13.79	□□□□□ -0.2
SCN1A-222	ENST00000642141	CCDC87	Q9NVE4	849 aa		13.79	□□□□□ -0.2
SCN1A-222	ENST00000642141	CANX	P27824	592 aa	Known RBP	13.78	□□□□□ -0.2
SCN1A-222	ENST00000642141	NUDC	Q9Y266	331 aa		13.78	□□□□□ -0.2
SCN1A-222	ENST00000642141	PARP3	Q9Y6F1	533 aa		13.78	□□□□□ -0.2
SCN1A-222	ENST00000642141	COL5A3	P25940	1745 aa	Predicted RBP	13.78	□□□□□ -0.2
SCN1A-222	ENST00000642141	MYH14	Q7Z406	1995 aa	Known RBP	13.78	□□□□□ -0.2
SCN1A-222	ENST00000642141	TTC5	Q8N0Z6	440 aa		13.77	□□□□□ -0.21
SCN1A-222	ENST00000642141	TJP1	Q07157	1748 aa		13.76	□□□□□ -0.21
SCN1A-222	ENST00000642141	CIC	Q96RK0	1608 aa	Predicted RBP	13.76	□□□□□ -0.21
SCN1A-222	ENST00000642141	USP42	Q9H9J4	1324 aa	Known RBP	13.76	□□□□□ -0.21
SCN1A-222	ENST00000642141	KCNQ3	O43525	872 aa		13.76	□□□□□ -0.21
SCN1A-222	ENST00000642141	ZPR1	O75312	459 aa		13.76	□□□□□ -0.21
SCN1A-222	ENST00000642141	USPL1	Q5W0Q7	1092 aa		13.76	□□□□□ -0.21
SCN1A-222	ENST00000642141	ZNF496	Q96IT1	587 aa	Predicted RBP	13.76	□□□□□ -0.21
SCN1A-222	ENST00000642141	ZBTB1	Q9Y2K1	713 aa		13.76	□□□□□ -0.21
SCN1A-222	ENST00000642141	ZNF831	Q5JPB2	1677 aa		13.75	□□□□□ -0.21
SCN1A-222	ENST00000642141	CHD4	Q14839	1912 aa		13.75	□□□□□ -0.21
SCN1A-222	ENST00000642141	DPEP1	P16444	411 aa		13.75	□□□□□ -0.21
SCN1A-222	ENST00000642141	DDR1	Q08345	913 aa		13.75	□□□□□ -0.21
SCN1A-222	ENST00000642141	DCTN1	Q14203	1278 aa		13.75	□□□□□ -0.21
SCN1A-222	ENST00000642141	MCM10	Q7L590	875 aa		13.75	□□□□□ -0.21
SCN1A-222	ENST00000642141	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.75	□□□□□ -0.21
SCN1A-222	ENST00000642141	KCP	Q6ZWJ8	1503 aa		13.74	□□□□□ -0.21
SCN1A-222	ENST00000642141	MRC1	P22897	1456 aa		13.74	□□□□□ -0.21
SCN1A-222	ENST00000642141	SOS1	Q07889	1333 aa	Predicted RBP	13.74	□□□□□ -0.21
SCN1A-222	ENST00000642141	BTBD11	A6QL63	1104 aa		13.74	□□□□□ -0.21
SCN1A-222	ENST00000642141	ZNF790	Q6PG37	636 aa		13.74	□□□□□ -0.21
SCN1A-222	ENST00000642141	ZNF526	Q8TF50	670 aa	Predicted RBP	13.74	□□□□□ -0.21
SCN1A-222	ENST00000642141	BCS1L	Q9Y276	419 aa		13.74	□□□□□ -0.21
SCN1A-222	ENST00000642141	FCHSD2	O94868	740 aa		13.73	□□□□□ -0.21
SCN1A-222	ENST00000642141	STARD3NL	O95772	234 aa		13.73	□□□□□ -0.21
SCN1A-222	ENST00000642141	RTF1	Q92541	710 aa	Known RBP	13.73	□□□□□ -0.21
SCN1A-222	ENST00000642141	C4A	P0C0L4	1744 aa		13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms