RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 MTHFSP49914 203 aa12.58□□□□□ -0.4
PHGDH-228ENST00000641847 POLKQ9UBT6 870 aa12.58□□□□□ -0.4
PHGDH-228ENST00000641847 BCS1LQ9Y276 419 aa12.58□□□□□ -0.4
PHGDH-228ENST00000641847 MAP3K19Q56UN5 1328 aa12.58□□□□□ -0.4
PHGDH-228ENST00000641847 KDM2BQ8NHM5 1336 aa12.58□□□□□ -0.4
PHGDH-228ENST00000641847 RTL1A6NKG5 1358 aa12.57□□□□□ -0.4
PHGDH-228ENST00000641847 PALLDQ8WX93 1383 aa12.57□□□□□ -0.4
PHGDH-228ENST00000641847 PPM1GO15355 546 aaPredicted RBP12.57□□□□□ -0.4
PHGDH-228ENST00000641847 SSFA2P28290 1259 aa12.57□□□□□ -0.4
PHGDH-228ENST00000641847 TGFB2P61812 414 aa12.57□□□□□ -0.4
PHGDH-228ENST00000641847 FLT4P35916 1363 aa12.56□□□□□ -0.4
PHGDH-228ENST00000641847 KIF24Q5T7B8 1368 aa12.56□□□□□ -0.4
PHGDH-228ENST00000641847 KCNA4P22459 653 aa12.56□□□□□ -0.4
PHGDH-228ENST00000641847 MPRIPQ6WCQ1 1025 aa12.56□□□□□ -0.4
PHGDH-228ENST00000641847 CFAP53Q96M91 514 aa12.56□□□□□ -0.4
PHGDH-228ENST00000641847 PLEKHG2Q9H7P9 1386 aa12.56□□□□□ -0.4
PHGDH-228ENST00000641847 HTRA3P83110 453 aa12.55□□□□□ -0.4
PHGDH-228ENST00000641847 DOT1LQ8TEK3 1739 aa12.54□□□□□ -0.4
PHGDH-228ENST00000641847 FCHSD2O94868 740 aa12.54□□□□□ -0.4
PHGDH-228ENST00000641847 TATP17735 454 aaPredicted RBP12.54□□□□□ -0.4
PHGDH-228ENST00000641847 SMC1BQ8NDV3 1235 aa12.54□□□□□ -0.4
PHGDH-228ENST00000641847 PCDH11XQ9BZA7 1347 aa12.54□□□□□ -0.4
PHGDH-228ENST00000641847 PCDH11YQ9BZA8 1340 aa12.54□□□□□ -0.4
PHGDH-228ENST00000641847 INSRP06213 1382 aa12.54□□□□□ -0.4
PHGDH-228ENST00000641847 MMP10P09238 476 aa12.53□□□□□ -0.4
PHGDH-228ENST00000641847 HOXC9P31274 260 aa12.53□□□□□ -0.4
PHGDH-228ENST00000641847 C9orf131Q5VYM1 1079 aa12.53□□□□□ -0.4
PHGDH-228ENST00000641847 WDR90Q96KV7 1748 aa12.53□□□□□ -0.4
PHGDH-228ENST00000641847 CICQ96RK0 1608 aaPredicted RBP12.52□□□□□ -0.4
PHGDH-228ENST00000641847 FAM208AQ9UK61 1670 aaKnown RBP12.52□□□□□ -0.4
PHGDH-228ENST00000641847 A0A0G2JLW4 131 aa12.52□□□□□ -0.41
PHGDH-228ENST00000641847 NLGN1Q8N2Q7 840 aa12.52□□□□□ -0.41
PHGDH-228ENST00000641847 CCDC87Q9NVE4 849 aa12.52□□□□□ -0.41
PHGDH-228ENST00000641847 C5P01031 1676 aa12.51□□□□□ -0.41
PHGDH-228ENST00000641847 GNPATO15228 680 aa12.51□□□□□ -0.41
PHGDH-228ENST00000641847 DIAPH1O60610 1272 aaKnown RBP12.51□□□□□ -0.41
PHGDH-228ENST00000641847 HSPA1AP0DMV8 641 aaKnown RBP12.51□□□□□ -0.41
PHGDH-228ENST00000641847 HSPA1BP0DMV9 641 aaKnown RBP12.51□□□□□ -0.41
PHGDH-228ENST00000641847 HSP90AB2PQ58FF8 381 aa12.51□□□□□ -0.41
PHGDH-228ENST00000641847 PNISRQ8TF01 805 aaKnown RBP12.51□□□□□ -0.41
PHGDH-228ENST00000641847 MEGF6O75095 1541 aa12.51□□□□□ -0.41
PHGDH-228ENST00000641847 WDR43Q15061 677 aaKnown RBP eCLIP12.5□□□□□ -0.41
PHGDH-228ENST00000641847 PXDNLA1KZ92 1463 aa12.49□□□□□ -0.41
PHGDH-228ENST00000641847 LOC102724428A0A0B4J2F2 783 aa12.49□□□□□ -0.41
PHGDH-228ENST00000641847 SLC34A2O95436 690 aa12.49□□□□□ -0.41
PHGDH-228ENST00000641847 IL13P35225 146 aa12.49□□□□□ -0.41
PHGDH-228ENST00000641847 SIK1P57059 783 aa12.49□□□□□ -0.41
PHGDH-228ENST00000641847 EIF4A2Q14240 407 aaKnown RBP12.49□□□□□ -0.41
PHGDH-228ENST00000641847 NBPF6Q5VWK0 638 aa12.49□□□□□ -0.41
PHGDH-228ENST00000641847 FAM9BQ8IZU0 186 aa12.49□□□□□ -0.41
PHGDH-228ENST00000641847 NBPF4Q96M43 638 aa12.49□□□□□ -0.41
PHGDH-228ENST00000641847 RRAGCQ9HB90 399 aa12.49□□□□□ -0.41
PHGDH-228ENST00000641847 C4BP0C0L5 1744 aa12.48□□□□□ -0.41
PHGDH-228ENST00000641847 U2SURPO15042 1029 aaKnown RBP12.48□□□□□ -0.41
PHGDH-228ENST00000641847 DPEP1P16444 411 aa12.48□□□□□ -0.41
PHGDH-228ENST00000641847 TRAPPC3LQ5T215 181 aa12.48□□□□□ -0.41
PHGDH-228ENST00000641847 AMIGO3Q86WK7 504 aa12.48□□□□□ -0.41
PHGDH-228ENST00000641847 RNF181Q9P0P0 153 aa12.48□□□□□ -0.41
PHGDH-228ENST00000641847 PIM2Q9P1W9 311 aa12.48□□□□□ -0.41
PHGDH-228ENST00000641847 NUDCQ9Y266 331 aa12.48□□□□□ -0.41
PHGDH-228ENST00000641847 PARP3Q9Y6F1 533 aa12.48□□□□□ -0.41
PHGDH-228ENST00000641847 C10orf71Q711Q0 1435 aa12.47□□□□□ -0.41
PHGDH-228ENST00000641847 ATP6V1AP38606 617 aa12.47□□□□□ -0.41
PHGDH-228ENST00000641847 DALRD3Q5D0E6 543 aaKnown RBP12.47□□□□□ -0.41
PHGDH-228ENST00000641847 SMIM5Q71RC9 77 aa12.47□□□□□ -0.41
PHGDH-228ENST00000641847 USHBP1Q8N6Y0 703 aa12.47□□□□□ -0.41
PHGDH-228ENST00000641847 RTCBQ9Y3I0 505 aaKnown RBP12.47□□□□□ -0.41
PHGDH-228ENST00000641847 RGPD2P0DJD1 1756 aa12.47□□□□□ -0.41
PHGDH-228ENST00000641847 U2AF1L5P0DN76 240 aaPredicted RBP12.46□□□□□ -0.41
PHGDH-228ENST00000641847 U2AF1Q01081 240 aaKnown RBP eCLIP12.46□□□□□ -0.41
PHGDH-228ENST00000641847 LINC00116Q8NCU8 138 aa12.46□□□□□ -0.41
PHGDH-228ENST00000641847 PIGBQ92521 554 aa12.46□□□□□ -0.41
PHGDH-228ENST00000641847 TMOD3Q9NYL9 352 aa12.46□□□□□ -0.41
PHGDH-228ENST00000641847 ZC3H4Q9UPT8 1303 aaKnown RBP12.45□□□□□ -0.42
PHGDH-228ENST00000641847 VEGFAP15692 232 aaPredicted RBP12.45□□□□□ -0.42
PHGDH-228ENST00000641847 RFC4P35249 363 aa12.45□□□□□ -0.42
PHGDH-228ENST00000641847 ADAMTS8Q9UP79 889 aa12.45□□□□□ -0.42
PHGDH-228ENST00000641847 SPG7Q9UQ90 795 aa12.45□□□□□ -0.42
PHGDH-228ENST00000641847 KCPQ6ZWJ8 1503 aa12.45□□□□□ -0.42
PHGDH-228ENST00000641847 PCDH10Q9P2E7 1040 aa12.44□□□□□ -0.42
PHGDH-228ENST00000641847 CYP27B1O15528 508 aa12.43□□□□□ -0.42
PHGDH-228ENST00000641847 DCAF5Q96JK2 942 aa12.43□□□□□ -0.42
PHGDH-228ENST00000641847 NCAPD2Q15021 1401 aa12.43□□□□□ -0.42
PHGDH-228ENST00000641847 TAF1LQ8IZX4 1826 aa12.42□□□□□ -0.42
PHGDH-228ENST00000641847 HMOX1P09601 288 aa12.42□□□□□ -0.42
PHGDH-228ENST00000641847 SULT6B1Q6IMI4 303 aa12.42□□□□□ -0.42
PHGDH-228ENST00000641847 CCDC146Q8IYE0 955 aa12.42□□□□□ -0.42
PHGDH-228ENST00000641847 YTHDC1Q96MU7 727 aaKnown RBP12.42□□□□□ -0.42
PHGDH-228ENST00000641847 EYA1Q99502 592 aa12.42□□□□□ -0.42
PHGDH-228ENST00000641847 KDRP35968 1356 aa12.42□□□□□ -0.42
PHGDH-228ENST00000641847 ITPK1Q13572 414 aa12.41□□□□□ -0.42
PHGDH-228ENST00000641847 NKX1-1Q15270 411 aaPredicted RBP12.41□□□□□ -0.42
PHGDH-228ENST00000641847 UBR3Q6ZT12 1888 aa12.41□□□□□ -0.42
PHGDH-228ENST00000641847 AEBP1Q8IUX7 1158 aa12.41□□□□□ -0.42
PHGDH-228ENST00000641847 RSPH6AQ9H0K4 717 aa12.41□□□□□ -0.42
PHGDH-228ENST00000641847 PRKAR2BP31323 418 aa12.4□□□□□ -0.42
PHGDH-228ENST00000641847 ARHGEF1Q92888 912 aaKnown RBP12.4□□□□□ -0.42
PHGDH-228ENST00000641847 AIDAQ96BJ3 306 aa12.4□□□□□ -0.42
PHGDH-228ENST00000641847 ASAP1Q9ULH1 1129 aa12.4□□□□□ -0.42
PHGDH-228ENST00000641847 GLTPD2A6NH11 291 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms