RNA–Protein interactions for RNA: ENST00000641587.1

PHGDH-222, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-222ENST00000641587 PXDNLA1KZ92 1463 aa13.87□□□□□ -0.19
PHGDH-222ENST00000641587 KIF13BQ9NQT8 1826 aa13.86□□□□□ -0.19
PHGDH-222ENST00000641587 HSPA6P17066 643 aa13.86□□□□□ -0.19
PHGDH-222ENST00000641587 ATP6V1AP38606 617 aa13.86□□□□□ -0.19
PHGDH-222ENST00000641587 ATG3Q9NT62 314 aa13.86□□□□□ -0.19
PHGDH-222ENST00000641587 WASHC2AQ641Q2 1341 aa13.86□□□□□ -0.19
PHGDH-222ENST00000641587 KDRP35968 1356 aa13.85□□□□□ -0.19
PHGDH-222ENST00000641587 KIF3CO14782 793 aa13.85□□□□□ -0.19
PHGDH-222ENST00000641587 MMP10P09238 476 aa13.85□□□□□ -0.19
PHGDH-222ENST00000641587 CDCA8Q53HL2 280 aa13.85□□□□□ -0.19
PHGDH-222ENST00000641587 SLC4A9Q96Q91 983 aa13.85□□□□□ -0.19
PHGDH-222ENST00000641587 HMGB2P26583 209 aaKnown RBP13.84□□□□□ -0.19
PHGDH-222ENST00000641587 TNNT2P45379 298 aaPredicted RBP13.84□□□□□ -0.19
PHGDH-222ENST00000641587 EIF4A2Q14240 407 aaKnown RBP13.84□□□□□ -0.19
PHGDH-222ENST00000641587 IFNL2Q8IZJ0 200 aa13.84□□□□□ -0.19
PHGDH-222ENST00000641587 POLKQ9UBT6 870 aa13.84□□□□□ -0.19
PHGDH-222ENST00000641587 COL5A3P25940 1745 aaPredicted RBP13.84□□□□□ -0.19
PHGDH-222ENST00000641587 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.83□□□□□ -0.2
PHGDH-222ENST00000641587 C4AP0C0L4 1744 aa13.83□□□□□ -0.2
PHGDH-222ENST00000641587 POLR3GLQ9BT43 218 aa13.82□□□□□ -0.2
PHGDH-222ENST00000641587 MYH14Q7Z406 1995 aaKnown RBP13.82□□□□□ -0.2
PHGDH-222ENST00000641587 C10orf71Q711Q0 1435 aa13.81□□□□□ -0.2
PHGDH-222ENST00000641587 BRCA1P38398 1863 aaKnown RBP13.81□□□□□ -0.2
PHGDH-222ENST00000641587 A0A0G2JLW4 131 aa13.81□□□□□ -0.2
PHGDH-222ENST00000641587 RBM42Q9BTD8 480 aaKnown RBP13.81□□□□□ -0.2
PHGDH-222ENST00000641587 BCS1LQ9Y276 419 aa13.81□□□□□ -0.2
PHGDH-222ENST00000641587 KDM6AO15550 1401 aaPredicted RBP13.81□□□□□ -0.2
PHGDH-222ENST00000641587 RTCBQ9Y3I0 505 aaKnown RBP13.8□□□□□ -0.2
PHGDH-222ENST00000641587 ZNF831Q5JPB2 1677 aa13.79□□□□□ -0.2
PHGDH-222ENST00000641587 TRAPPC3LQ5T215 181 aa13.79□□□□□ -0.2
PHGDH-222ENST00000641587 ARHGEF1Q92888 912 aaKnown RBP13.79□□□□□ -0.2
PHGDH-222ENST00000641587 GYS1P13807 737 aa13.78□□□□□ -0.2
PHGDH-222ENST00000641587 DPEP1P16444 411 aa13.78□□□□□ -0.2
PHGDH-222ENST00000641587 ARHGAP27Q6ZUM4 889 aa13.77□□□□□ -0.21
PHGDH-222ENST00000641587 CNTNAP4Q9C0A0 1308 aa13.77□□□□□ -0.21
PHGDH-222ENST00000641587 NMRK2Q9NPI5 230 aa13.77□□□□□ -0.21
PHGDH-222ENST00000641587 TJP1Q07157 1748 aa13.76□□□□□ -0.21
PHGDH-222ENST00000641587 ERVV-2B6SEH9 535 aa13.76□□□□□ -0.21
PHGDH-222ENST00000641587 FCHSD2O94868 740 aa13.76□□□□□ -0.21
PHGDH-222ENST00000641587 TGFB2P61812 414 aa13.76□□□□□ -0.21
PHGDH-222ENST00000641587 ZNF530Q6P9A1 599 aaPredicted RBP13.76□□□□□ -0.21
PHGDH-222ENST00000641587 AEBP1Q8IUX7 1158 aa13.76□□□□□ -0.21
PHGDH-222ENST00000641587 NLGN1Q8N2Q7 840 aa13.76□□□□□ -0.21
PHGDH-222ENST00000641587 CCDC87Q9NVE4 849 aa13.76□□□□□ -0.21
PHGDH-222ENST00000641587 SRP68Q9UHB9 627 aaKnown RBP13.76□□□□□ -0.21
PHGDH-222ENST00000641587 PTCD1O75127 700 aaKnown RBP13.75□□□□□ -0.21
PHGDH-222ENST00000641587 RPS6KA4O75676 772 aa13.75□□□□□ -0.21
PHGDH-222ENST00000641587 RFC4P35249 363 aa13.75□□□□□ -0.21
PHGDH-222ENST00000641587 DCAF5Q96JK2 942 aa13.75□□□□□ -0.21
PHGDH-222ENST00000641587 ARFGEF1Q9Y6D6 1849 aa13.75□□□□□ -0.21
PHGDH-222ENST00000641587 ADRA2BP18089 450 aa13.74□□□□□ -0.21
PHGDH-222ENST00000641587 KCNA3P22001 575 aa13.74□□□□□ -0.21
PHGDH-222ENST00000641587 CABP4P57796 275 aa13.74□□□□□ -0.21
PHGDH-222ENST00000641587 RC3H1Q5TC82 1133 aaKnown RBP13.74□□□□□ -0.21
PHGDH-222ENST00000641587 PARP3Q9Y6F1 533 aa13.74□□□□□ -0.21
PHGDH-222ENST00000641587 PLEKHG2Q9H7P9 1386 aa13.73□□□□□ -0.21
PHGDH-222ENST00000641587 ADAMTS7Q9UKP4 1686 aa13.73□□□□□ -0.21
PHGDH-222ENST00000641587 TOMM70O94826 608 aa13.73□□□□□ -0.21
PHGDH-222ENST00000641587 CRKLP46109 303 aaKnown RBP13.73□□□□□ -0.21
PHGDH-222ENST00000641587 DDR1Q08345 913 aa13.73□□□□□ -0.21
PHGDH-222ENST00000641587 FKBP8Q14318 412 aa13.73□□□□□ -0.21
PHGDH-222ENST00000641587 PLEKHO1Q53GL0 409 aaPredicted RBP13.73□□□□□ -0.21
PHGDH-222ENST00000641587 WDR90Q96KV7 1748 aa13.73□□□□□ -0.21
PHGDH-222ENST00000641587 HSP90AB1P08238 724 aaKnown RBP13.72□□□□□ -0.21
PHGDH-222ENST00000641587 APLP1P51693 650 aa13.72□□□□□ -0.21
PHGDH-222ENST00000641587 HTRA3P83110 453 aa13.72□□□□□ -0.21
PHGDH-222ENST00000641587 C9orf131Q5VYM1 1079 aa13.72□□□□□ -0.21
PHGDH-222ENST00000641587 KCPQ6ZWJ8 1503 aa13.72□□□□□ -0.21
PHGDH-222ENST00000641587 SCN11AQ9UI33 1791 aa13.71□□□□□ -0.21
PHGDH-222ENST00000641587 USP42Q9H9J4 1324 aaKnown RBP13.71□□□□□ -0.21
PHGDH-222ENST00000641587 MTHFSP49914 203 aa13.71□□□□□ -0.21
PHGDH-222ENST00000641587 DNAJC5GQ8N7S2 189 aa13.71□□□□□ -0.21
PHGDH-222ENST00000641587 NFATC2IPQ8NCF5 419 aa13.71□□□□□ -0.21
PHGDH-222ENST00000641587 PANK3Q9H999 370 aa13.71□□□□□ -0.21
PHGDH-222ENST00000641587 CHRNA5P30532 468 aa13.7□□□□□ -0.22
PHGDH-222ENST00000641587 SBF1O95248 1867 aa13.7□□□□□ -0.22
PHGDH-222ENST00000641587 PCNTO95613 3336 aa13.69□□□□□ -0.22
PHGDH-222ENST00000641587 AMOTQ4VCS5 1084 aa13.69□□□□□ -0.22
PHGDH-222ENST00000641587 C1orf141Q5JVX7 400 aa13.69□□□□□ -0.22
PHGDH-222ENST00000641587 SULT6B1Q6IMI4 303 aa13.69□□□□□ -0.22
PHGDH-222ENST00000641587 PIM2Q9P1W9 311 aa13.69□□□□□ -0.22
PHGDH-222ENST00000641587 VIRMAQ69YN4 1812 aaKnown RBP13.69□□□□□ -0.22
PHGDH-222ENST00000641587 HSPA5P11021 654 aaKnown RBP13.68□□□□□ -0.22
PHGDH-222ENST00000641587 INTS5Q6P9B9 1019 aaKnown RBP13.68□□□□□ -0.22
PHGDH-222ENST00000641587 RNF181Q9P0P0 153 aa13.68□□□□□ -0.22
PHGDH-222ENST00000641587 AFDNP55196 1824 aaKnown RBP13.68□□□□□ -0.22
PHGDH-222ENST00000641587 POLRMTO00411 1230 aaKnown RBP13.67□□□□□ -0.22
PHGDH-222ENST00000641587 RASSF7Q02833 373 aa13.67□□□□□ -0.22
PHGDH-222ENST00000641587 DALRD3Q5D0E6 543 aaKnown RBP13.67□□□□□ -0.22
PHGDH-222ENST00000641587 DNAJC10Q8IXB1 793 aa13.67□□□□□ -0.22
PHGDH-222ENST00000641587 MORC1Q86VD1 984 aa13.66□□□□□ -0.22
PHGDH-222ENST00000641587 RBM46Q8TBY0 533 aaKnown RBP13.66□□□□□ -0.22
PHGDH-222ENST00000641587 TNRC6CQ9HCJ0 1690 aaKnown RBP13.66□□□□□ -0.22
PHGDH-222ENST00000641587 IL13P35225 146 aa13.65□□□□□ -0.22
PHGDH-222ENST00000641587 EIF4G2P78344 907 aaKnown RBP eCLIP13.65□□□□□ -0.227e-14■■■■■ 63.8
PHGDH-222ENST00000641587 SLC39A6Q13433 755 aa13.65□□□□□ -0.22
PHGDH-222ENST00000641587 USPL1Q5W0Q7 1092 aa13.65□□□□□ -0.22
PHGDH-222ENST00000641587 C16orf71Q8IYS4 520 aaPredicted RBP13.65□□□□□ -0.22
PHGDH-222ENST00000641587 RRAGCQ9HB90 399 aa13.65□□□□□ -0.22
PHGDH-222ENST00000641587 LGR6Q9HBX8 967 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms