RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 IFFO2Q5TF58 517 aa20.73■□□□□ 0.91
SYNE2-228ENST00000639659 ATG3Q9NT62 314 aa20.73■□□□□ 0.91
SYNE2-228ENST00000639659 POLKQ9UBT6 870 aa20.73■□□□□ 0.91
SYNE2-228ENST00000639659 CICQ96RK0 1608 aaPredicted RBP20.73■□□□□ 0.91
SYNE2-228ENST00000639659 EIF4A2Q14240 407 aaKnown RBP20.72■□□□□ 0.91
SYNE2-228ENST00000639659 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.72■□□□□ 0.91
SYNE2-228ENST00000639659 N4BP2Q86UW6 1770 aaPredicted RBP20.72■□□□□ 0.91
SYNE2-228ENST00000639659 BCS1LQ9Y276 419 aa20.71■□□□□ 0.91
SYNE2-228ENST00000639659 RTCBQ9Y3I0 505 aaKnown RBP20.71■□□□□ 0.91
SYNE2-228ENST00000639659 TRAPPC3LQ5T215 181 aa20.7■□□□□ 0.9
SYNE2-228ENST00000639659 PXDNLA1KZ92 1463 aa20.69■□□□□ 0.9
SYNE2-228ENST00000639659 A0A0G2JLW4 131 aa20.68■□□□□ 0.9
SYNE2-228ENST00000639659 KDRP35968 1356 aa20.67■□□□□ 0.9
SYNE2-228ENST00000639659 KIF3CO14782 793 aa20.66■□□□□ 0.9
SYNE2-228ENST00000639659 RFC4P35249 363 aa20.66■□□□□ 0.9
SYNE2-228ENST00000639659 ZNF530Q6P9A1 599 aaPredicted RBP20.66■□□□□ 0.9
SYNE2-228ENST00000639659 ARHGAP27Q6ZUM4 889 aa20.66■□□□□ 0.9
SYNE2-228ENST00000639659 KIF13BQ9NQT8 1826 aa20.65■□□□□ 0.9
SYNE2-228ENST00000639659 KIAA1551Q9HCM1 1747 aa20.65■□□□□ 0.9
SYNE2-228ENST00000639659 CABP4P57796 275 aa20.65■□□□□ 0.9
SYNE2-228ENST00000639659 NLGN1Q8N2Q7 840 aa20.65■□□□□ 0.9
SYNE2-228ENST00000639659 ARHGEF1Q92888 912 aaKnown RBP20.65■□□□□ 0.9
SYNE2-228ENST00000639659 SLC4A9Q96Q91 983 aa20.65■□□□□ 0.9
SYNE2-228ENST00000639659 CCDC87Q9NVE4 849 aa20.65■□□□□ 0.9
SYNE2-228ENST00000639659 C4AP0C0L4 1744 aa20.64■□□□□ 0.9
SYNE2-228ENST00000639659 C10orf71Q711Q0 1435 aa20.64■□□□□ 0.89
SYNE2-228ENST00000639659 FCHSD2O94868 740 aa20.64■□□□□ 0.89
SYNE2-228ENST00000639659 HSP90AB1P08238 724 aaKnown RBP20.64■□□□□ 0.89
SYNE2-228ENST00000639659 TRIM26Q12899 539 aaPredicted RBP20.64■□□□□ 0.89
SYNE2-228ENST00000639659 PLEKHO1Q53GL0 409 aaPredicted RBP20.64■□□□□ 0.89
SYNE2-228ENST00000639659 PARP3Q9Y6F1 533 aa20.64■□□□□ 0.89
SYNE2-228ENST00000639659 COL5A3P25940 1745 aaPredicted RBP20.64■□□□□ 0.89
SYNE2-228ENST00000639659 ERVV-2B6SEH9 535 aa20.63■□□□□ 0.89
SYNE2-228ENST00000639659 PTCD1O75127 700 aaKnown RBP20.63■□□□□ 0.89
SYNE2-228ENST00000639659 DPEP1P16444 411 aa20.63■□□□□ 0.89
SYNE2-228ENST00000639659 DCAF5Q96JK2 942 aa20.63■□□□□ 0.89
SYNE2-228ENST00000639659 TGFB2P61812 414 aa20.62■□□□□ 0.89
SYNE2-228ENST00000639659 KDM6AO15550 1401 aaPredicted RBP20.61■□□□□ 0.89
SYNE2-228ENST00000639659 CNTNAP4Q9C0A0 1308 aa20.61■□□□□ 0.89
SYNE2-228ENST00000639659 GYS1P13807 737 aa20.61■□□□□ 0.89
SYNE2-228ENST00000639659 ADRA2BP18089 450 aa20.61■□□□□ 0.89
SYNE2-228ENST00000639659 C1orf141Q5JVX7 400 aa20.61■□□□□ 0.89
SYNE2-228ENST00000639659 RPS6KA4O75676 772 aa20.6■□□□□ 0.89
SYNE2-228ENST00000639659 AEBP1Q8IUX7 1158 aa20.6■□□□□ 0.89
SYNE2-228ENST00000639659 MTHFSP49914 203 aa20.59■□□□□ 0.89
SYNE2-228ENST00000639659 RC3H1Q5TC82 1133 aaKnown RBP20.59■□□□□ 0.89
SYNE2-228ENST00000639659 NMRK2Q9NPI5 230 aa20.59■□□□□ 0.89
SYNE2-228ENST00000639659 SRP68Q9UHB9 627 aaKnown RBP20.59■□□□□ 0.89
SYNE2-228ENST00000639659 ZNF831Q5JPB2 1677 aa20.58■□□□□ 0.89
SYNE2-228ENST00000639659 MYH14Q7Z406 1995 aaKnown RBP20.58■□□□□ 0.89
SYNE2-228ENST00000639659 PANK3Q9H999 370 aa20.58■□□□□ 0.89
SYNE2-228ENST00000639659 CRKLP46109 303 aaKnown RBP20.57■□□□□ 0.88
SYNE2-228ENST00000639659 AMOTQ4VCS5 1084 aa20.57■□□□□ 0.88
SYNE2-228ENST00000639659 PCGF6Q9BYE7 350 aa20.57■□□□□ 0.88
SYNE2-228ENST00000639659 PLEKHG2Q9H7P9 1386 aa20.57■□□□□ 0.88
SYNE2-228ENST00000639659 APLP1P51693 650 aa20.56■□□□□ 0.88
SYNE2-228ENST00000639659 MORC1Q86VD1 984 aa20.56■□□□□ 0.88
SYNE2-228ENST00000639659 BRCA1P38398 1863 aaKnown RBP20.56■□□□□ 0.88
SYNE2-228ENST00000639659 TOMM70O94826 608 aa20.55■□□□□ 0.88
SYNE2-228ENST00000639659 C9orf131Q5VYM1 1079 aa20.55■□□□□ 0.88
SYNE2-228ENST00000639659 C16orf71Q8IYS4 520 aaPredicted RBP20.55■□□□□ 0.88
SYNE2-228ENST00000639659 NFATC2IPQ8NCF5 419 aa20.55■□□□□ 0.88
SYNE2-228ENST00000639659 FKBP8Q14318 412 aa20.54■□□□□ 0.88
SYNE2-228ENST00000639659 SULT6B1Q6IMI4 303 aa20.54■□□□□ 0.88
SYNE2-228ENST00000639659 TJP1Q07157 1748 aa20.53■□□□□ 0.88
SYNE2-228ENST00000639659 HSPA5P11021 654 aaKnown RBP20.53■□□□□ 0.88
SYNE2-228ENST00000639659 PIM2Q9P1W9 311 aa20.53■□□□□ 0.88
SYNE2-228ENST00000639659 EIF4G2P78344 907 aaKnown RBP eCLIP20.52■□□□□ 0.88
SYNE2-228ENST00000639659 DDR1Q08345 913 aa20.52■□□□□ 0.88
SYNE2-228ENST00000639659 DALRD3Q5D0E6 543 aaKnown RBP20.52■□□□□ 0.88
SYNE2-228ENST00000639659 TIMELESSQ9UNS1 1208 aa20.52■□□□□ 0.88
SYNE2-228ENST00000639659 ARFGEF1Q9Y6D6 1849 aa20.52■□□□□ 0.88
SYNE2-228ENST00000639659 USP42Q9H9J4 1324 aaKnown RBP20.52■□□□□ 0.87
SYNE2-228ENST00000639659 CHRNA5P30532 468 aa20.51■□□□□ 0.87
SYNE2-228ENST00000639659 RNF181Q9P0P0 153 aa20.51■□□□□ 0.87
SYNE2-228ENST00000639659 KCPQ6ZWJ8 1503 aa20.5■□□□□ 0.87
SYNE2-228ENST00000639659 KCNA3P22001 575 aa20.5■□□□□ 0.87
SYNE2-228ENST00000639659 SCN11AQ9UI33 1791 aa20.49■□□□□ 0.87
SYNE2-228ENST00000639659 WDR90Q96KV7 1748 aa20.48■□□□□ 0.87
SYNE2-228ENST00000639659 ZPR1O75312 459 aa20.48■□□□□ 0.87
SYNE2-228ENST00000639659 HTRA3P83110 453 aa20.48■□□□□ 0.87
SYNE2-228ENST00000639659 DNAJC10Q8IXB1 793 aa20.48■□□□□ 0.87
SYNE2-228ENST00000639659 USPL1Q5W0Q7 1092 aa20.47■□□□□ 0.87
SYNE2-228ENST00000639659 INTS5Q6P9B9 1019 aaKnown RBP20.46■□□□□ 0.87
SYNE2-228ENST00000639659 KNSTRNQ9Y448 316 aa20.46■□□□□ 0.87
SYNE2-228ENST00000639659 KDM2BQ8NHM5 1336 aa20.46■□□□□ 0.87
SYNE2-228ENST00000639659 POLRMTO00411 1230 aaKnown RBP20.45■□□□□ 0.86
SYNE2-228ENST00000639659 SLC39A6Q13433 755 aa20.45■□□□□ 0.86
SYNE2-228ENST00000639659 RBM46Q8TBY0 533 aaKnown RBP20.45■□□□□ 0.86
SYNE2-228ENST00000639659 HMOX1P09601 288 aa20.44■□□□□ 0.86
SYNE2-228ENST00000639659 IL13P35225 146 aa20.44■□□□□ 0.86
SYNE2-228ENST00000639659 RASSF7Q02833 373 aa20.44■□□□□ 0.86
SYNE2-228ENST00000639659 AKAP4Q5JQC9 854 aa20.44■□□□□ 0.86
SYNE2-228ENST00000639659 RRAGCQ9HB90 399 aa20.44■□□□□ 0.86
SYNE2-228ENST00000639659 SLC52A2Q9HAB3 445 aa20.43■□□□□ 0.86
SYNE2-228ENST00000639659 LGR6Q9HBX8 967 aa20.43■□□□□ 0.86
SYNE2-228ENST00000639659 VIRMAQ69YN4 1812 aaKnown RBP20.43■□□□□ 0.86
SYNE2-228ENST00000639659 DNAJC5GQ8N7S2 189 aa20.42■□□□□ 0.86
SYNE2-228ENST00000639659 SOS1Q07889 1333 aaPredicted RBP20.42■□□□□ 0.86
SYNE2-228ENST00000639659 TNRC6CQ9HCJ0 1690 aaKnown RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms