RNA–Protein interactions for RNA: ENST00000638114.1

CACNA1A-259, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 3

Gene CACNA1A, Length 517 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-259ENST00000638114 AKAP4Q5JQC9 854 aa22.56■■□□□ 1.2
CACNA1A-259ENST00000638114 LINC00116Q8NCU8 138 aa22.56■■□□□ 1.2
CACNA1A-259ENST00000638114 CFAP53Q96M91 514 aa22.56■■□□□ 1.2
CACNA1A-259ENST00000638114 ITPK1Q13572 414 aa22.55■■□□□ 1.2
CACNA1A-259ENST00000638114 FLAD1Q8NFF5 587 aa22.55■■□□□ 1.2
CACNA1A-259ENST00000638114 RBM42Q9BTD8 480 aaKnown RBP22.55■■□□□ 1.2
CACNA1A-259ENST00000638114 SCN11AQ9UI33 1791 aa22.55■■□□□ 1.2
CACNA1A-259ENST00000638114 COL24A1Q17RW2 1714 aa22.54■■□□□ 1.2
CACNA1A-259ENST00000638114 DCAF8L1A6NGE4 600 aa22.54■■□□□ 1.2
CACNA1A-259ENST00000638114 PHF14O94880 888 aa22.53■■□□□ 1.2
CACNA1A-259ENST00000638114 PPP2R1AP30153 589 aa22.53■■□□□ 1.2
CACNA1A-259ENST00000638114 NFATC2IPQ8NCF5 419 aa22.53■■□□□ 1.2
CACNA1A-259ENST00000638114 SYT17Q9BSW7 474 aa22.53■■□□□ 1.2
CACNA1A-259ENST00000638114 UBR3Q6ZT12 1888 aa22.53■■□□□ 1.2
CACNA1A-259ENST00000638114 MTHFSDQ2M296 383 aaKnown RBP22.52■■□□□ 1.2
CACNA1A-259ENST00000638114 MSL1Q68DK7 614 aa22.52■■□□□ 1.2
CACNA1A-259ENST00000638114 AMIGO3Q86WK7 504 aa22.51■■□□□ 1.19
CACNA1A-259ENST00000638114 KLHL34Q8N239 644 aa22.51■■□□□ 1.19
CACNA1A-259ENST00000638114 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.5■■□□□ 1.19
CACNA1A-259ENST00000638114 GNPATO15228 680 aa22.5■■□□□ 1.19
CACNA1A-259ENST00000638114 SMIM5Q71RC9 77 aa22.5■■□□□ 1.19
CACNA1A-259ENST00000638114 SLC4A9Q96Q91 983 aa22.5■■□□□ 1.19
CACNA1A-259ENST00000638114 LGR6Q9HBX8 967 aa22.5■■□□□ 1.19
CACNA1A-259ENST00000638114 ZNF831Q5JPB2 1677 aa22.49■■□□□ 1.19
CACNA1A-259ENST00000638114 PTCD1O75127 700 aaKnown RBP22.49■■□□□ 1.19
CACNA1A-259ENST00000638114 SSFA2P28290 1259 aa22.49■■□□□ 1.19
CACNA1A-259ENST00000638114 VIRMAQ69YN4 1812 aaKnown RBP22.49■■□□□ 1.19
CACNA1A-259ENST00000638114 MAP3K5Q99683 1374 aa22.49■■□□□ 1.19
CACNA1A-259ENST00000638114 RNMTO43148 476 aaKnown RBP22.48■■□□□ 1.19
CACNA1A-259ENST00000638114 SLC52A2Q9HAB3 445 aa22.48■■□□□ 1.19
CACNA1A-259ENST00000638114 NUDCQ9Y266 331 aa22.48■■□□□ 1.19
CACNA1A-259ENST00000638114 MRC1P22897 1456 aa22.46■■□□□ 1.19
CACNA1A-259ENST00000638114 COL5A3P25940 1745 aaPredicted RBP22.45■■□□□ 1.19
CACNA1A-259ENST00000638114 GAS2L2Q8NHY3 880 aa22.45■■□□□ 1.18
CACNA1A-259ENST00000638114 PRKAR2BP31323 418 aa22.44■■□□□ 1.18
CACNA1A-259ENST00000638114 ADAMTS7Q9UKP4 1686 aa22.44■■□□□ 1.18
CACNA1A-259ENST00000638114 RTCBQ9Y3I0 505 aaKnown RBP22.44■■□□□ 1.18
CACNA1A-259ENST00000638114 CNTNAP4Q9C0A0 1308 aa22.43■■□□□ 1.18
CACNA1A-259ENST00000638114 U2AF1L5P0DN76 240 aaPredicted RBP22.43■■□□□ 1.18
CACNA1A-259ENST00000638114 U2AF1Q01081 240 aaKnown RBP eCLIP22.43■■□□□ 1.18
CACNA1A-259ENST00000638114 RSPH6AQ9H0K4 717 aa22.43■■□□□ 1.18
CACNA1A-259ENST00000638114 RC3H1Q5TC82 1133 aaKnown RBP22.42■■□□□ 1.18
CACNA1A-259ENST00000638114 GNAT3A8MTJ3 354 aa22.41■■□□□ 1.18
CACNA1A-259ENST00000638114 SLC39A6Q13433 755 aa22.41■■□□□ 1.18
CACNA1A-259ENST00000638114 TJP1Q07157 1748 aa22.4■■□□□ 1.18
CACNA1A-259ENST00000638114 TRAPPC3LQ5T215 181 aa22.4■■□□□ 1.18
CACNA1A-259ENST00000638114 PHACTR3Q96KR7 559 aa22.4■■□□□ 1.18
CACNA1A-259ENST00000638114 MYH14Q7Z406 1995 aaKnown RBP22.39■■□□□ 1.17
CACNA1A-259ENST00000638114 CICQ96RK0 1608 aaPredicted RBP22.39■■□□□ 1.17
CACNA1A-259ENST00000638114 RPS6KA4O75676 772 aa22.38■■□□□ 1.17
CACNA1A-259ENST00000638114 CRKLP46109 303 aaKnown RBP22.38■■□□□ 1.17
CACNA1A-259ENST00000638114 TEFQ10587 303 aa22.38■■□□□ 1.17
CACNA1A-259ENST00000638114 NLGN2Q8NFZ4 835 aa22.38■■□□□ 1.17
CACNA1A-259ENST00000638114 ADRA2BP18089 450 aa22.37■■□□□ 1.17
CACNA1A-259ENST00000638114 YY1P25490 414 aa22.37■■□□□ 1.17
CACNA1A-259ENST00000638114 DDX10Q13206 875 aaKnown RBP22.37■■□□□ 1.17
CACNA1A-259ENST00000638114 IL17REQ8NFR9 667 aa22.37■■□□□ 1.17
CACNA1A-259ENST00000638114 KCPQ6ZWJ8 1503 aa22.36■■□□□ 1.17
CACNA1A-259ENST00000638114 FCHSD2O94868 740 aa22.36■■□□□ 1.17
CACNA1A-259ENST00000638114 DNAJC10Q8IXB1 793 aa22.36■■□□□ 1.17
CACNA1A-259ENST00000638114 ARHGEF1Q92888 912 aaKnown RBP22.36■■□□□ 1.17
CACNA1A-259ENST00000638114 RFC4P35249 363 aa22.35■■□□□ 1.17
CACNA1A-259ENST00000638114 GPR162Q16538 588 aa22.35■■□□□ 1.17
CACNA1A-259ENST00000638114 PELP1Q8IZL8 1130 aaKnown RBP22.35■■□□□ 1.17
CACNA1A-259ENST00000638114 TTC5Q8N0Z6 440 aa22.34■■□□□ 1.17
CACNA1A-259ENST00000638114 C4AP0C0L4 1744 aa22.34■■□□□ 1.17
CACNA1A-259ENST00000638114 CD2APQ9Y5K6 639 aa22.33■■□□□ 1.17
CACNA1A-259ENST00000638114 SIPA1L3O60292 1781 aaPredicted RBP22.33■■□□□ 1.16
CACNA1A-259ENST00000638114 UBR2Q8IWV8 1755 aa22.33■■□□□ 1.16
CACNA1A-259ENST00000638114 INTS5Q6P9B9 1019 aaKnown RBP22.32■■□□□ 1.16
CACNA1A-259ENST00000638114 CCDC87Q9NVE4 849 aa22.32■■□□□ 1.16
CACNA1A-259ENST00000638114 CEMIPQ8WUJ3 1361 aa22.31■■□□□ 1.16
CACNA1A-259ENST00000638114 MMP10P09238 476 aa22.31■■□□□ 1.16
CACNA1A-259ENST00000638114 RALBP1Q15311 655 aa22.31■■□□□ 1.16
CACNA1A-259ENST00000638114 NLGN1Q8N2Q7 840 aa22.31■■□□□ 1.16
CACNA1A-259ENST00000638114 RTF1Q92541 710 aaKnown RBP22.31■■□□□ 1.16
CACNA1A-259ENST00000638114 CYP19A1P11511 503 aaPredicted RBP22.3■■□□□ 1.16
CACNA1A-259ENST00000638114 GYS1P13807 737 aa22.3■■□□□ 1.16
CACNA1A-259ENST00000638114 VSIG10Q8N0Z9 540 aa22.3■■□□□ 1.16
CACNA1A-259ENST00000638114 NEFMP07197 916 aa22.29■■□□□ 1.16
CACNA1A-259ENST00000638114 ZNF790Q6PG37 636 aa22.29■■□□□ 1.16
CACNA1A-259ENST00000638114 SRP68Q9UHB9 627 aaKnown RBP22.28■■□□□ 1.16
CACNA1A-259ENST00000638114 UTRNP46939 3433 aa22.27■■□□□ 1.16
CACNA1A-259ENST00000638114 MCM10Q7L590 875 aa22.27■■□□□ 1.16
CACNA1A-259ENST00000638114 ZNF496Q96IT1 587 aaPredicted RBP22.27■■□□□ 1.16
CACNA1A-259ENST00000638114 USP42Q9H9J4 1324 aaKnown RBP22.27■■□□□ 1.16
CACNA1A-259ENST00000638114 BTBD11A6QL63 1104 aa22.26■■□□□ 1.15
CACNA1A-259ENST00000638114 ZBTB1Q9Y2K1 713 aa22.26■■□□□ 1.15
CACNA1A-259ENST00000638114 SOS1Q07889 1333 aaPredicted RBP22.26■■□□□ 1.15
CACNA1A-259ENST00000638114 CHD4Q14839 1912 aa22.25■■□□□ 1.15
CACNA1A-259ENST00000638114 HEG1Q9ULI3 1381 aa22.25■■□□□ 1.15
CACNA1A-259ENST00000638114 DCTN1Q14203 1278 aa22.25■■□□□ 1.15
CACNA1A-259ENST00000638114 STARD3NLO95772 234 aa22.24■■□□□ 1.15
CACNA1A-259ENST00000638114 YBX3P16989 372 aaKnown RBP eCLIP22.24■■□□□ 1.15
CACNA1A-259ENST00000638114 FMNL2Q96PY5 1086 aa22.24■■□□□ 1.15
CACNA1A-259ENST00000638114 PARP3Q9Y6F1 533 aa22.24■■□□□ 1.15
CACNA1A-259ENST00000638114 HTATSF1O43719 755 aaKnown RBP22.23■■□□□ 1.15
CACNA1A-259ENST00000638114 ZPR1O75312 459 aa22.23■■□□□ 1.15
CACNA1A-259ENST00000638114 CANXP27824 592 aaKnown RBP22.23■■□□□ 1.15
CACNA1A-259ENST00000638114 ZEB1P37275 1124 aaPredicted RBP22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms