RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 SPG7Q9UQ90 795 aa15.8■□□□□ 0.12
CLN3-257ENST00000637110 C4BP0C0L5 1744 aa15.8■□□□□ 0.12
CLN3-257ENST00000637110 PALLDQ8WX93 1383 aa15.78■□□□□ 0.12
CLN3-257ENST00000637110 AMER1Q5JTC6 1135 aaPredicted RBP15.78■□□□□ 0.12
CLN3-257ENST00000637110 UBR3Q6ZT12 1888 aa15.78■□□□□ 0.12
CLN3-257ENST00000637110 PHF14O94880 888 aa15.77■□□□□ 0.12
CLN3-257ENST00000637110 FSTL1Q12841 308 aa15.77■□□□□ 0.12
CLN3-257ENST00000637110 MPRIPQ6WCQ1 1025 aa15.76■□□□□ 0.11
CLN3-257ENST00000637110 SMARCC1Q92922 1105 aaPredicted RBP15.76■□□□□ 0.11
CLN3-257ENST00000637110 NMRK2Q9NPI5 230 aa15.76■□□□□ 0.11
CLN3-257ENST00000637110 TOGARAM1Q9Y4F4 1720 aa15.75■□□□□ 0.11
CLN3-257ENST00000637110 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.75■□□□□ 0.11
CLN3-257ENST00000637110 CYP27B1O15528 508 aa15.75■□□□□ 0.11
CLN3-257ENST00000637110 SSFA2P28290 1259 aa15.75■□□□□ 0.11
CLN3-257ENST00000637110 KIF13BQ9NQT8 1826 aa15.74■□□□□ 0.11
CLN3-257ENST00000637110 PER1O15534 1290 aaPredicted RBP15.74■□□□□ 0.11
CLN3-257ENST00000637110 PLEKHG2Q9H7P9 1386 aa15.74■□□□□ 0.11
CLN3-257ENST00000637110 MTHFSP49914 203 aa15.73■□□□□ 0.11
CLN3-257ENST00000637110 TGFB2P61812 414 aa15.73■□□□□ 0.11
CLN3-257ENST00000637110 HTRA3P83110 453 aa15.73■□□□□ 0.11
CLN3-257ENST00000637110 ARHGAP27Q6ZUM4 889 aa15.73■□□□□ 0.11
CLN3-257ENST00000637110 IFNL2Q8IZJ0 200 aa15.73■□□□□ 0.11
CLN3-257ENST00000637110 BCS1LQ9Y276 419 aa15.73■□□□□ 0.11
CLN3-257ENST00000637110 PXDNLA1KZ92 1463 aa15.72■□□□□ 0.11
CLN3-257ENST00000637110 PCNTO95613 3336 aa15.72■□□□□ 0.11
CLN3-257ENST00000637110 PLEKHO1Q53GL0 409 aaPredicted RBP15.72■□□□□ 0.11
CLN3-257ENST00000637110 SULT6B1Q6IMI4 303 aa15.72■□□□□ 0.11
CLN3-257ENST00000637110 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.72■□□□□ 0.11
CLN3-257ENST00000637110 N4BP2Q86UW6 1770 aaPredicted RBP15.72■□□□□ 0.11
CLN3-257ENST00000637110 KDM2BQ8NHM5 1336 aa15.71■□□□□ 0.11
CLN3-257ENST00000637110 NCAPD2Q15021 1401 aa15.71■□□□□ 0.11
CLN3-257ENST00000637110 ITGB4P16144 1822 aa15.71■□□□□ 0.1
CLN3-257ENST00000637110 PHKG2P15735 406 aa15.7■□□□□ 0.1
CLN3-257ENST00000637110 PKD1L3Q7Z443 1732 aa15.69■□□□□ 0.1
CLN3-257ENST00000637110 MMP10P09238 476 aa15.69■□□□□ 0.1
CLN3-257ENST00000637110 IL13P35225 146 aa15.69■□□□□ 0.1
CLN3-257ENST00000637110 AMOTQ4VCS5 1084 aa15.69■□□□□ 0.1
CLN3-257ENST00000637110 ZNF530Q6P9A1 599 aaPredicted RBP15.69■□□□□ 0.1
CLN3-257ENST00000637110 AMIGO3Q86WK7 504 aa15.69■□□□□ 0.1
CLN3-257ENST00000637110 AEBP1Q8IUX7 1158 aa15.69■□□□□ 0.1
CLN3-257ENST00000637110 TMOD3Q9NYL9 352 aa15.69■□□□□ 0.1
CLN3-257ENST00000637110 KIAA1551Q9HCM1 1747 aa15.68■□□□□ 0.1
CLN3-257ENST00000637110 TNRC6CQ9HCJ0 1690 aaKnown RBP15.68■□□□□ 0.1
CLN3-257ENST00000637110 DIAPH1O60610 1272 aaKnown RBP15.68■□□□□ 0.1
CLN3-257ENST00000637110 NKX1-1Q15270 411 aaPredicted RBP15.68■□□□□ 0.1
CLN3-257ENST00000637110 C10orf71Q711Q0 1435 aa15.68■□□□□ 0.1
CLN3-257ENST00000637110 FCHSD2O94868 740 aa15.67■□□□□ 0.1
CLN3-257ENST00000637110 HSP90AB1P08238 724 aaKnown RBP15.67■□□□□ 0.1
CLN3-257ENST00000637110 C1orf141Q5JVX7 400 aa15.67■□□□□ 0.1
CLN3-257ENST00000637110 C9orf131Q5VYM1 1079 aa15.67■□□□□ 0.1
CLN3-257ENST00000637110 SMC1BQ8NDV3 1235 aa15.67■□□□□ 0.1
CLN3-257ENST00000637110 PIGBQ92521 554 aa15.67■□□□□ 0.1
CLN3-257ENST00000637110 ARFGEF1Q9Y6D6 1849 aa15.66■□□□□ 0.1
CLN3-257ENST00000637110 BRCA1P38398 1863 aaKnown RBP15.66■□□□□ 0.1
CLN3-257ENST00000637110 A0A0G2JLW4 131 aa15.66■□□□□ 0.1
CLN3-257ENST00000637110 GNPATO15228 680 aa15.66■□□□□ 0.1
CLN3-257ENST00000637110 HMOX1P09601 288 aa15.66■□□□□ 0.1
CLN3-257ENST00000637110 SMIM5Q71RC9 77 aa15.66■□□□□ 0.1
CLN3-257ENST00000637110 NPC1L1Q9UHC9 1359 aa15.65■□□□□ 0.1
CLN3-257ENST00000637110 KCPQ6ZWJ8 1503 aa15.65■□□□□ 0.1
CLN3-257ENST00000637110 LOC102724428A0A0B4J2F2 783 aa15.65■□□□□ 0.1
CLN3-257ENST00000637110 U2SURPO15042 1029 aaKnown RBP15.65■□□□□ 0.1
CLN3-257ENST00000637110 HSPA1AP0DMV8 641 aaKnown RBP15.65■□□□□ 0.1
CLN3-257ENST00000637110 HSPA1BP0DMV9 641 aaKnown RBP15.65■□□□□ 0.1
CLN3-257ENST00000637110 SIK1P57059 783 aa15.65■□□□□ 0.1
CLN3-257ENST00000637110 NLGN1Q8N2Q7 840 aa15.65■□□□□ 0.1
CLN3-257ENST00000637110 CCDC87Q9NVE4 849 aa15.65■□□□□ 0.1
CLN3-257ENST00000637110 LINC00116Q8NCU8 138 aa15.64■□□□□ 0.09
CLN3-257ENST00000637110 DCAF5Q96JK2 942 aa15.64■□□□□ 0.09
CLN3-257ENST00000637110 CFAP53Q96M91 514 aa15.64■□□□□ 0.09
CLN3-257ENST00000637110 CABP4P57796 275 aa15.63■□□□□ 0.09
CLN3-257ENST00000637110 RRAGCQ9HB90 399 aa15.63■□□□□ 0.09
CLN3-257ENST00000637110 DPEP1P16444 411 aa15.62■□□□□ 0.09
CLN3-257ENST00000637110 RNF181Q9P0P0 153 aa15.62■□□□□ 0.09
CLN3-257ENST00000637110 ASAP1Q9ULH1 1129 aa15.62■□□□□ 0.09
CLN3-257ENST00000637110 C4AP0C0L4 1744 aa15.61■□□□□ 0.09
CLN3-257ENST00000637110 ERVV-2B6SEH9 535 aa15.61■□□□□ 0.09
CLN3-257ENST00000637110 SLC34A2O95436 690 aa15.61■□□□□ 0.09
CLN3-257ENST00000637110 ATP6V1AP38606 617 aa15.6■□□□□ 0.09
CLN3-257ENST00000637110 TRAPPC3LQ5T215 181 aa15.6■□□□□ 0.09
CLN3-257ENST00000637110 RBM42Q9BTD8 480 aaKnown RBP15.6■□□□□ 0.09
CLN3-257ENST00000637110 PIM2Q9P1W9 311 aa15.6■□□□□ 0.09
CLN3-257ENST00000637110 RTCBQ9Y3I0 505 aaKnown RBP15.6■□□□□ 0.09
CLN3-257ENST00000637110 PARP3Q9Y6F1 533 aa15.6■□□□□ 0.09
CLN3-257ENST00000637110 KDRP35968 1356 aa15.6■□□□□ 0.09
CLN3-257ENST00000637110 ADRA2BP18089 450 aa15.59■□□□□ 0.09
CLN3-257ENST00000637110 ATG3Q9NT62 314 aa15.59■□□□□ 0.09
CLN3-257ENST00000637110 NUDCQ9Y266 331 aa15.59■□□□□ 0.09
CLN3-257ENST00000637110 ZC3H4Q9UPT8 1303 aaKnown RBP15.59■□□□□ 0.09
CLN3-257ENST00000637110 SBF1O95248 1867 aa15.59■□□□□ 0.09
CLN3-257ENST00000637110 PPP2R1AP30153 589 aa15.58■□□□□ 0.08
CLN3-257ENST00000637110 ITPK1Q13572 414 aa15.58■□□□□ 0.08
CLN3-257ENST00000637110 DALRD3Q5D0E6 543 aaKnown RBP15.58■□□□□ 0.08
CLN3-257ENST00000637110 AKAP4Q5JQC9 854 aa15.58■□□□□ 0.08
CLN3-257ENST00000637110 NFATC2IPQ8NCF5 419 aa15.57■□□□□ 0.08
CLN3-257ENST00000637110 RFC4P35249 363 aa15.56■□□□□ 0.08
CLN3-257ENST00000637110 MTHFSDQ2M296 383 aaKnown RBP15.56■□□□□ 0.08
CLN3-257ENST00000637110 KDM6AO15550 1401 aaPredicted RBP15.56■□□□□ 0.08
CLN3-257ENST00000637110 VEGFAP15692 232 aaPredicted RBP15.55■□□□□ 0.08
CLN3-257ENST00000637110 KCNA3P22001 575 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms